PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40348.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 350aa    MW: 38908.5 Da    PI: 6.1089
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40348.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06115136426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+ f++ G Ck+Gd C F+Hg
  KFK40348.1 115 VACPEFRK-GGCKRGDGCEFSHG 136
                 68******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012111137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.174112138IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4115136IPR000571Zinc finger, CCCH-type
SMARTSM003561.4146169IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.338146170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMIGEFNPTV QIPPWPVSDD LTTAEIYGSP DGGSSVIEAL AALQRYLPCN ESDLDSDLGP  60
DSPIDAYSCD HFRMYEFKVR RCARGRSHDW TECPYAHPGE KARRRDPRKF HYSGVACPEF  120
RKGGCKRGDG CEFSHGVFEC WLHPARYRTQ PCKDGGGCRR RVCFFAHSPD QLRVLPINQS  180
PDRVDSFEGL RRGFQFSISP TSGSPPVSPR DDSVDVTQCS LSRSLGSNSV NDVVASFRNL  240
QLNKMKSHIG CYGSGFGSGS PRGSVLGPGF LSLPNTPTRP GIRLMDMWDN NNNNGLEEEP  300
VMERVESGRE LRAKMFEKLS KENCMDRVDP DPNQDSGEGP DVGWVSELVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743556.10.0zinc finger CCCH domain-containing protein 20-like
RefseqXP_013743557.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-179C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A087HDZ60.0A0A087HDZ6_ARAAL; Uncharacterized protein
STRINGA0A087HDZ60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-162C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]