PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40239.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25453.4 Da    PI: 5.468
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40239.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-1962115457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 ++++t+eq++ Le  F  ++++ +e++ +LA +lgL+ rqV vWFqNrRa++k+
  KFK40239.1  62 KRKLTDEQVRMLEISFGDEHKLETERKDRLALELGLDPRQVAVWFQNRRARWKN 115
                 4589************************************************95 PP
2HD-ZIP_I/II119.32e-3861152293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+l++eqv++LE sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+ +++++ e++rL++ev +L+e+l e
   KFK40239.1  61 RKRKLTDEQVRMLEISFGDEHKLETERKDRLALELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNVHENVVVEKCRLDSEVLNLKEQLYE 152
                  8***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1855117IPR009057Homeodomain-like
PROSITE profilePS5007116.34256116IPR001356Homeobox domain
SMARTSM003894.2E-1859120IPR001356Homeobox domain
CDDcd000863.00E-1661117No hitNo description
PfamPF000462.2E-1662115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1963122IPR009057Homeodomain-like
PRINTSPR000313.6E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000313.6E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNNQNVDDHN LLLISQLYPS VYTPFVPQQE ESKPAPRRRR RKNKSAAVAE EGGDGSSGWF  60
RKRKLTDEQV RMLEISFGDE HKLETERKDR LALELGLDPR QVAVWFQNRR ARWKNKRLED  120
EYTKLKNVHE NVVVEKCRLD SEVLNLKEQL YEAEREIQRL AQRVEGTSSN SPISLSISVE  180
ANHTTPFFGD YEIGDDGGGY ENLFYSQDYI GLEWMGPFS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40239.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298525.11e-125homeobox-leucine zipper protein ATHB-21 isoform X2
SwissprotQ9ZU701e-124ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A087HDN71e-161A0A087HDN7_ARAAL; Uncharacterized protein
STRINGA0A087HDN61e-156(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-107homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]