PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK40095.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 112aa MW: 12531.8 Da PI: 4.4375

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK40095.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.5	8.1e-14	42	91	1	50
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqC 50 rW++ e+laL+++r+em++++r++ lk+plWee+++ +++ +e++ k+ KFK40095.1 42 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEIARSSSRKEIEKEEKEL 91 8*************************************999999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-7	41	104	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MSVNSSGPLD SSGGVIGSSD EEEKDMKMEE TGDRGGGGGG NRWPRPETLA LLRIRSEMDK 60 AFRDSTLKAP LWEEIARSSS RKEIEKEEKE LERIVYEVDK RVNGEAREET TE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK40095.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300884.2	5e-24	trihelix transcription factor GT-2
Refseq	XP_010533325.1	3e-24	PREDICTED: trihelix transcription factor GT-2-like, partial
Swissprot	Q39117	6e-23	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A087HD93	7e-72	A0A087HD93_ARAAL; Uncharacterized protein
STRING	A0A087HD92	4e-47	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-19	Trihelix family protein