PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK39784.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | B3 | ||||||||
Protein Properties | Length: 736aa MW: 80888.1 Da PI: 5.5033 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.7 | 2.9e-20 | 592 | 688 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ l +ed ++r+W++++++ ++ks++y+l+ ++ +Fvk ngL+egDf+v++ ++ +++++++ KFK39784.1 592 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVKTNGLQEGDFIVIY--SDvKCGKYLI 687 79*************************999999********7778*******99777777777777.********************..5559998877 PP E CS B3 95 k 95 + KFK39784.1 688 R 688 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-28 | 586 | 696 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 2.99E-38 | 589 | 690 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-22 | 590 | 684 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.602 | 591 | 693 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-19 | 591 | 693 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-16 | 592 | 687 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MIVSTSGERI IHGSITPMKT LHVAENGGDL TEDCGILAGD ADEAVLMDDV GREIWLADHG 60 GDHNHGHGDD DLIVHHDPSI FYTDLPTLPD FPCMSSSSSS STSPAPVNAI VSSASSSSAA 120 SSSTSSAASW AILRSDGEDP TNNQNQYGSG NCDVESSAAL QSTASMEIPL ESSQGFGCGE 180 GGGGGGRDCI DMMDTFGYMD LLDSNEFFDT SAIFSTDDDT QNPNLMDQTL ERRDEVVVPM 240 VENSSGGDMQ MMNSSLEQDE DLAAVFLEWL KNNKETVSAE DLRKVKIKKA TIESAARRLG 300 GGKEAMKQLL KLILEWVQTN HLQRRRSNGN NNNITYQQSF QQDPFQNPNH NNNNNLIQPS 360 DQTCFSPSTW VPPPPQLQPQ QAFVSDPGFG YMPAPNFPPP QEYLPLLESP PSWLPPQSGA 420 MPHQQQFAMP NSQYSPFQDT GGGGFTGYNM NPYQYPPYLP SGQMRDQRLI RLCSSATKEA 480 RKKRMARQRR FLSHHHRHNN NSTQNQTQMG ESCAAVASQL NPVTTTPTGG TWMYWPNVSA 540 VPPPVSAQLP AMETQLPTMD RAGTASAMPR QQVVPDRRQG WKPEKNLRFL LQKVLKQSDV 600 GNLGRIVLPK KEAETHLPEL EARDGISLAM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG 660 DFVKTNGLQE GDFIVIYSDV KCGKYLIRGV KVRQPAGQKP EAPPSTAAAT KRQSKSQRNI 720 NNSPSANMVA SPTSVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 3e-37 | 587 | 694 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 3e-37 | 587 | 694 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK39784.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_189108.1 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q01593 | 0.0 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A087HCD2 | 0.0 | A0A087HCD2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HCD2 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10280 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 0.0 | B3 family protein |