PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39733.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 279aa    MW: 31796.5 Da    PI: 9.0549
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39733.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.4e-192067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+d+v+ +G g+W+ +ar  g++R +k+c++rw +yl
       KFK39733.1 20 KGPWTAEEDRLLIDYVRIHGEGRWNYVARLAGLKRNGKSCRLRWVNYL 67
                     79********************************************97 PP
2Myb_DNA-binding52.51.1e-1673117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
       KFK39733.1  73 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2921567IPR017930Myb domain
SuperFamilySSF466891.65E-3017114IPR009057Homeodomain-like
SMARTSM007173.5E-151969IPR001005SANT/Myb domain
PfamPF002493.2E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-232174IPR009057Homeodomain-like
CDDcd001671.18E-102267No hitNo description
PROSITE profilePS5129424.38968122IPR017930Myb domain
SMARTSM007174.7E-1572120IPR001005SANT/Myb domain
PfamPF002495.2E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2475121IPR009057Homeodomain-like
CDDcd001674.92E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSLWGVMGGG WGMVEEGWRK GPWTAEEDRL LIDYVRIHGE GRWNYVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ETIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KTKSPTNNAE RTKNRILKRQ QFQQQRQMEL QQEQQLVQFN QLDMKKIMSL LDDDDNNNNG  180
DNNFSSSSSG SSEGGAFYVP HQITHSTTTT TSVYDPNSNG YYPVVPVPIP EANVNEDNAI  240
WDSLWNLDLE GQGGSFSGGG GGGACAPRKH CFQNLVIPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25201227108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39733.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5502980.0AY550298.1 Arabidopsis thaliana MYB transcription factor (At3g24310) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489869.11e-148PREDICTED: myb-related protein 305
TrEMBLA0A087HC810.0A0A087HC81_ARAAL; Uncharacterized protein (Fragment)
STRINGA0A087HC810.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-116myb domain protein 305