PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39287.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 272aa    MW: 29761.6 Da    PI: 8.6029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39287.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011109131123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ Cgk F++   L  H  +H
  KFK39287.1 109 YKCSVCGKAFPSYQALGGHKASH 131
                 9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.2E-14108132IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.801109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4109131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0043109131IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.09E-9109131No hitNo description
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-9159186No hitNo description
PROSITE profilePS501579.099164186IPR007087Zinc finger, C2H2
PfamPF139129.0E-14164188IPR007087Zinc finger, C2H2
SMARTSM003550.17164186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALEAMNSPS SFTVRKETDD LMNDAVFIEP WLKRKRSKRQ RSHSPSSSSS SPPRSRSKTS  60
PNQDLTEEEY LALCLLMLAR EQPNESLHQP QTQTRFQPQP PQDLTKIAYK CSVCGKAFPS  120
YQALGGHKAS HRIKPPPTDD PNITVVAGEK THNPTTVPAS GKIHECSICH KVFPTGQALG  180
GHKRCHYEGN LGGGGGGVSK SISHSGSVSS TVSEERSHRG LIDLNLPALP ELSLRHNPII  240
DEEILSPLTG KKPVLLTDQD QVINQQDLSL KI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138LKRKRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39287.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406484.11e-113zinc finger protein AZF2
SwissprotQ9SSW21e-111AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA0A087HAY50.0A0A087HAY5_ARAAL; Uncharacterized protein
STRINGA0A087HAY50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-99zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]