PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK39275.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 267aa MW: 28603.8 Da PI: 4.9669

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK39275.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	7.9e-05	146	186	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq KFK39275.1 146 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 186 567889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.573	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	143	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-7	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-4	146	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGDTIENQDD GATVEAAGVT SFSELLMLSD GVLNSSDHRR EDNDGDGGED SFGFVFSGKN 60 GSGMLCFSGG YQNDDESLFL EPSGVSVTDP SCINTICNSN SYDACTVDKS SNKRIGSDIA 120 QNPDQKLKPV KKCKRNQDKS SVGITKVRKE RLGERIAALQ QLVSPYGKTD AASVLHEAMG 180 YIKFLQDQIQ VLSSPYLINH HNLLIDGGVV TGDVTPAKKV RDLRSRGLCL VPVSSTVHVE 240 NSNGADLWSP ATTMGHITSP SVNQGPY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK39275.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084520	1e-114	AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024015435.1	1e-141	transcription factor bHLH113 isoform X2
Swissprot	Q9LT67	1e-138	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A087HAX3	0.0	A0A087HAX3_ARAAL; Uncharacterized protein
STRING	A0A087HAX3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-129	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]