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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KFK39028.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 672aa MW: 73559.2 Da PI: 6.3191 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.3 | 1.8e-28 | 231 | 284 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v gLt+e+v+SHLQkYR+
KFK39028.1 231 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVSGLTRENVASHLQKYRI 284
79*******************.********************************7 PP
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| 2 | Response_reg | 76.1 | 1.3e-25 | 34 | 142 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + Ga
KFK39028.1 34 VLVVDDDPTCLMILERMLRTCLY-EVTKCNRAEMALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHGAV 128
89*********************.***************888889**********************6644.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +e+l +
KFK39028.1 129 DYLIKPVRMEALKN 142
*********99986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 2.5E-204 | 14 | 664 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 5.83E-36 | 30 | 161 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 2.0E-41 | 31 | 174 | No hit | No description |
| SMART | SM00448 | 7.4E-31 | 32 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.221 | 33 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 7.9E-23 | 34 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 5.95E-28 | 35 | 147 | No hit | No description |
| PROSITE profile | PS51294 | 12.211 | 228 | 287 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 3.76E-19 | 229 | 288 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 230 | 289 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.8E-24 | 231 | 284 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.4E-8 | 233 | 283 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 672 aa Download sequence Send to blast |
MMNPSHGRGL GSGGGSSKGG GETVVEMFPS GLRVLVVDDD PTCLMILERM LRTCLYEVTK 60 CNRAEMALSL LRKNKHGFDI VISDVHMPDM DGFKLLEHVG LEMDLPVIMM SADDSKSVVL 120 KGVTHGAVDY LIKPVRMEAL KNIWQHVVRK RRTEWNVPEH SGSIEDTGDR QQQQNREGGR 180 AAVSGGEDGA DDNSSSVNEG NNWRSSSRKR KDEEGEEQGD DKEEDASNLK KPRVVWSVEL 240 HQQFVAAVNQ LGVEKAVPKK ILELMNVSGL TRENVASHLQ KYRIYLRRLG GVSQHQGNLN 300 NSFMTGQDAS FGPLSTLNGF DLQALAVTGQ LPAQSLAQLQ AAGLGRPTMV SKSGLPVSSM 360 VDERSIFSFD NSKPRFGDGL GHHGQQPQPQ HQMNLLHGVP TGMEPRQLAG LQQLPMGNRM 420 SIQQQIAAVR AGHSVQNSGM LMPLAGQQPL PRGQPPMLPS SQSSIRQPML SNRISESRVL 480 PTSYTNLATQ HSSNSMAFNN FQQEFPVNSF PLASAPGLSQ PVRKAPSYQE EVNSSEAGFT 540 TPSYDMFTNR QNDWDLRNIG IAFDSHQDAE SVAFSNSEAY SSSSMSRNNS AVAATEHGRN 600 QQQPHHQVYP AGGNGSVRVK SERVSGDSAA MAFHEQYSNQ EDLMSALLKQ EGIAPVDTEF 660 DFDAYSIDNI PV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 8e-23 | 230 | 289 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KFK39028.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK176489 | 0.0 | AK176489.1 Arabidopsis thaliana mRNA for putative ARR1 protein, complete cds, clone: RAFL24-30-K07. | |||
| GenBank | AY056099 | 0.0 | AY056099.1 Arabidopsis thaliana AT3g16857/MUH15_1 mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006297106.1 | 0.0 | two-component response regulator ARR1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A087HA76 | 0.0 | A0A087HA76_ARAAL; Two-component response regulator | ||||
| STRING | A0A087HA76 | 0.0 | (Arabis alpina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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