PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | CPP | ||||||||
Protein Properties | Length: 525aa MW: 57854.2 Da PI: 5.2093 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.6 | 3.4e-15 | 370 | 408 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+C+kskClk+YC+Cfaag +C e C+C++C+Nk KFK37896.1 370 NCKRCRCRKSKCLKLYCDCFAAGLYCVEPCSCQNCFNKP 408 589**********************************96 PP | |||||||
2 | TCR | 54.2 | 2.9e-17 | 456 | 493 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gCnCkks ClkkYCeCf g+ Cs +C+C +CkN KFK37896.1 456 HTRGCNCKKSGCLKKYCECFLMGVGCSPSCRCVGCKNI 493 889**********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.5E-16 | 369 | 410 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.276 | 370 | 495 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-10 | 372 | 407 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-16 | 455 | 496 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.1E-13 | 458 | 492 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MDTPDKNRIS AVSLCNVEDS PVFQYINDLS PIEPVKGARA ENIFHSLASS SPTSLFSSPQ 60 INSYRDSRFS IKRHRSLELS SPVVLIGESV KSSPDVLEAV PFKEQISLAI ELANTLKNGN 120 DGCDIQMVSC DEVTMDAEND IRRAGSRKQS DDLCRELYEL EADSDGVLVQ TEEMEAEIGS 180 GARKIMVDVA GIQNRNVVEP GGSYSVQVPA KAPDISLRSL FNVAAIDSTS KAEDMEEIGL 240 QPSHKQRSVR RRCLSFEVGG SYNRIPLRDS TNDLPLGFTS INKAPYPQKC LDSIKQVTDE 300 ILPIPQSIGL HLNSLVNSSA SSDRNNLIYK EGAFSTPVST KRDLVSYDND VMEVAPERSM 360 EGAYFEELGN CKRCRCRKSK CLKLYCDCFA AGLYCVEPCS CQNCFNKPIH EDTVMKSRRE 420 IEDRNPLAFA PKLASTSDYA TSFANENIKT PASARHTRGC NCKKSGCLKK YCECFLMGVG 480 CSPSCRCVGC KNIVGDTNEQ FQFPYAVDSV AVTINEEAKD HGNYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-19 | 372 | 493 | 12 | 121 | Protein lin-54 homolog |
5fd3_B | 1e-19 | 372 | 493 | 12 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37896.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408142.2 | 0.0 | protein tesmin/TSO1-like CXC 4 | ||||
Swissprot | Q84JZ8 | 0.0 | TCX4_ARATH; Protein tesmin/TSO1-like CXC 4 | ||||
TrEMBL | A0A087H6Z4 | 0.0 | A0A087H6Z4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H6Z4 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14840 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |