PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK37841.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 36589 Da PI: 6.9136 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.4 | 7.9e-55 | 19 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdee++++yLk+kv ++++++ +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ kg l KFK37841.1 19 LPPGFRFHPTDEEIITHYLKEKVFNTRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGCL 116 79*************************999.78***************8888899***************************************9**** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grapkgekt+Wvmheyrl KFK37841.1 117 VGMKKTLVFYRGRAPKGEKTNWVMHEYRL 145 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-62 | 16 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.432 | 19 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-29 | 20 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MVEEGGVVVN QGREEVVDLP PGFRFHPTDE EIITHYLKEK VFNTRFTAAA IGQADLNKNE 60 PWDLPKIAKM GEKEFYFFCQ RDRKYPTGMR TNRATVSGYW KATGKDKEIF RGKGCLVGMK 120 KTLVFYRGRA PKGEKTNWVM HEYRLDGKYS YHNLPKSARD EWVVCRVFHK NAPTTTTTTN 180 QLSRIDSLDN IDHLLDFSSL PNLIDPAFLG QPGPSFSGAV QNHNLKPVLH HPTTAPIDNT 240 YLNFPYHSVP NSGYGLGYGT GSGNNNNKGM VKLEHSFVSV SQDTGLSSDV NATATPEISS 300 YPVMMNPTAN TYDDLDDFLW DDYTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-50 | 17 | 172 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-50 | 17 | 172 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-50 | 17 | 172 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-50 | 17 | 172 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-50 | 17 | 172 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-50 | 17 | 172 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-50 | 17 | 172 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00332 | DAP | Transfer from AT3G04060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK37841.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361623 | 0.0 | AF361623.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds. | |||
GenBank | AY081834 | 0.0 | AY081834.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187056.1 | 0.0 | NAC domain containing protein 46 | ||||
Swissprot | Q9SQQ6 | 0.0 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A0A087H6T9 | 0.0 | A0A087H6T9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H6T9 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 0.0 | NAC domain containing protein 46 |
Publications ? help Back to Top | |||
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