PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK37763.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 405aa MW: 46429.9 Da PI: 4.5229

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK37763.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.8	2.5e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + + ++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v ++ KFK37763.1 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSIDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-RD 102 79**************************.99***********6444555789********************************99.89 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y+grap+g +t Wvmheyrl KFK37763.1 103 QAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.503	6	157	IPR003441	NAC domain
Pfam	PF02365	4.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSI 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDQAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDESECEP SAYGMQDAYA LCRVFKKIVI EAKPREQHRS YVHAMSNVSG 180 NSSFDACSDL EISSTTHQVQ NAFQPRFGNG RFNSNAIRNE DWSQYYGSSY GPFATPYKVN 240 NEIECSMLQH NISLPPLRVE NSAVSDCDFF TSMTRNNDNG VLEDFPFAAS SSNHYNNIDD 300 QVINIGNYDE QLTMSNHHIN QGYKEEQKII PSLDDTDQNL GFHGNNANNN IDIDDFFSFD 360 MYNEESGNRI EDNEDDNTNE TLDSSGFEVV EEETSDSNPS LLFLE

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSI  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDQAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDESECEP SAYGMQDAYA LCRVFKKIVI EAKPREQHRS YVHAMSNVSG  180
NSSFDACSDL EISSTTHQVQ NAFQPRFGNG RFNSNAIRNE DWSQYYGSSY GPFATPYKVN  240
NEIECSMLQH NISLPPLRVE NSAVSDCDFF TSMTRNNDNG VLEDFPFAAS SSNHYNNIDD  300
QVINIGNYDE QLTMSNHHIN QGYKEEQKII PSLDDTDQNL GFHGNNANNN IDIDDFFSFD  360
MYNEESGNRI EDNEDDNTNE TLDSSGFEVV EEETSDSNPS LLFLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-56	1	157	12	165	NAC domain-containing protein 19
4dul_B	1e-56	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00329	DAP	Transfer from AT3G03200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK37763.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT030461	0.0	BT030461.1 Arabidopsis thaliana At3g03200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680617.1	0.0	NAC domain-containing protein 45-like
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A087H6L1	0.0	A0A087H6L1_ARAAL; Uncharacterized protein
STRING	A0A087H6L1	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]