PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37362.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 441aa    MW: 48706.1 Da    PI: 8.66
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37362.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07121140626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+++ + G Ck G++C+F H+
  KFK37362.1 121 CKYWIA-GNCKKGEQCQFLHS 140
                 ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.02E-7116140IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-6116141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253120142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5120140IPR000571Zinc finger, CCCH-type
SMARTSM003209.3E-5146185IPR001680WD40 repeat
SuperFamilySSF509781.83E-45148194IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.8E-46149436IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.0012150185IPR001680WD40 repeat
PROSITE profilePS5029421.568153441IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.416153194IPR001680WD40 repeat
PRINTSPR003202.2E-6172186IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780172186IPR019775WD40 repeat, conserved site
SMARTSM0032016225262IPR001680WD40 repeat
SuperFamilySSF509781.83E-45232438IPR017986WD40-repeat-containing domain
SMARTSM003200.0021270307IPR001680WD40 repeat
PfamPF004005.4E-4272306IPR001680WD40 repeat
PROSITE profilePS5008210.776277316IPR001680WD40 repeat
PRINTSPR003202.2E-6294308IPR020472G-protein beta WD-40 repeat
SMARTSM003206.0E-5310347IPR001680WD40 repeat
PfamPF004003.8E-4312346IPR001680WD40 repeat
PROSITE profilePS500829.239317346IPR001680WD40 repeat
PRINTSPR003202.2E-6334348IPR020472G-protein beta WD-40 repeat
SMARTSM0032075353395IPR001680WD40 repeat
SMARTSM003200.77398435IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNHKAPRRYS QGRDFGVDRE QDFAADIVPR RSSVPYENRL KKCPYKGSRN LVWTSKEFQA  60
SEGDRPRKND AYRSMNSSVP GTGYRVSNQP TRKNVVYGSR SSRVWRSGDN GSPKSREKCV  120
CKYWIAGNCK KGEQCQFLHS WCCFPGLVMV ATLEGHKKDI KGIALPEGSD KLYSASNDGA  180
LKIWDCHTGQ CVHEINLQAE AGSLTSEGPW VFLGLPNAVK AFNVQTCKDL HLNGPVGQVN  240
AIAVGNGMLF AGTSSGSISV WKATDTETDP FEHLTSLEGH SGEVKCLIIG GQTLYSGSVD  300
RTIKVWVLKT LQCLTTLRQH SDTVTSLLCW DQYLLSSSLD GTIKVWGSLE SGNLKVIYTR  360
REEQQSVHAL CGLNDAEAKP IIFCSYQNGT VGIYDLPSFE ERGKMFSTHT IETLTIGPDG  420
LLFSGDKSGK LRVWNLRGSK V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-231524396325Tako8
6g6n_A3e-231524396325Tako8
6g6n_B3e-231524396325Tako8
6g6n_C3e-231524396325Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100641.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087H5G00.0A0A087H5G0_ARAAL; Uncharacterized protein
STRINGA0A087H5G00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein