PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37084.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 597aa    MW: 66995.6 Da    PI: 9.7798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37084.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-131769248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++W t+E++ll++av+++G+++W++++++++        +t+ +c+ ++++++
       KFK37084.1 17 QKWGTWEELLLACAVHRHGTESWNSVSSEIQkrtlnlPSLTASSCRTKYFDLK 69
                     79*****************************9999999999999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4811169IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-61368IPR009057Homeodomain-like
SuperFamilySSF466893.32E-61471IPR009057Homeodomain-like
SMARTSM007171.1E-51571IPR001005SANT/Myb domain
PfamPF002492.0E-121769IPR001005SANT/Myb domain
CDDcd001672.30E-51869No hitNo description
SMARTSM002972.1E-11259368IPR001487Bromodomain
SuperFamilySSF473701.15E-14262364IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.7E-12272365IPR001487Bromodomain
PfamPF004391.7E-8275353IPR001487Bromodomain
CDDcd043691.15E-10278359No hitNo description
PROSITE profilePS5001410.291286349IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAKPENNDDT IPERQQQKWG TWEELLLACA VHRHGTESWN SVSSEIQKRT LNLPSLTASS  60
CRTKYFDLKN RFTQESVAEI STVPWLDELK KLRVDELRRE VEQYDLSISS LQSKVKKLEQ  120
DREISVKDLD TKIENSLDLD KTRVEKKEIR RESENDSGEP PIPSLNDFVS PDLNEVSPGT  180
GSVKLAGEDS CKGSSESVEK ELVVNSERVE PVRLTELTES MAESVGAEEA GKETSDVQSS  240
ASLPRKGTSE PENEDQSPRI RDLPGESQPS ISFVEILLSH SCGSHFSRRL ETQETLEYNK  300
IVREHIDFGI IGKRVEEGWY KSSMNKLFRD LLLLINNARF FYHKGTSEFN FAEELNELVK  360
KQMTTSTTTT TLKKPKEKSC LVLVPFVEET VAVSSSKLVS KKPRMSVPIV ACRKRSSLAT  420
KPLLLLSDKK TDHVVDVDEK KLVLEKDDDD DKLKKMTRGL VAIRNLKNRD SGLNVDEEKN  480
GSNKSGSLKK RSAAAIFLKR MRVGSSSSDS VVEILKPSSA IEQRKTKSNG SNKADAKKRV  540
RKNQNEKASP VKRNNGRGLK RSSSSSSPVL GKRSREAGQE KEAASSSSTR LKKRVRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1589595RLKKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181745.10.0DNA-binding bromodomain-containing protein
TrEMBLA0A087H4N20.0A0A087H4N2_ARAAL; Uncharacterized protein
STRINGA0A087H4N20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.10.0DNA-binding bromodomain-containing protein