PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK37035.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

C3H

Protein Properties

Length: 675aa MW: 73782.5 Da PI: 6.6198

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK37035.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	269	289	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg KFK37035.1 269 PCPDFRK-GACRRGDMCEYAHG 289 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.13E-16	8	150	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-17	9	151	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.48E-14	15	149	No hit	No description
Pfam	PF12796	9.7E-11	52	125	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.175	57	160	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0078	57	87	IPR002110	Ankyrin repeat
PRINTS	PR01415	2.6E-5	58	73	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.422	92	127	IPR002110	Ankyrin repeat
SMART	SM00248	0.0034	92	124	IPR002110	Ankyrin repeat
PRINTS	PR01415	2.6E-5	111	125	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	264	290	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-4	269	291	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	269	291	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-5	269	289	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-4	297	327	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	38	299	322	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MNHLRVETED TFASLLELAA NNDVEGVRLS IERDPSCVDE PGLWYGRQKG SKAMVNDQRT 60 PLMVAATYGS IDVIKLIVSL TDANVNRACG NDQTTALHCA ASGGAVNAIQ VVKLLLAAGA 120 DLNVLDGEGQ RAGDVIVVPP KLEGVKLMLQ ELLSADGSRN LRVVTNVLNR STSPPQSPVG 180 ENGEYGSGSP LGSPFKLKST EFKKEYPVDP SLPDIKNSIY ATDEFRMYSF KVRPCSRAYS 240 HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY 300 RTRLCKDGTS CARRVCFFAH TPDELRPLYA STGSAVPSPR SNADYAAALS LLPGSPSGVS 360 VMSPLSPSAA GNGMSHSNMA WPQPNVPALH LPGSNLQSSR LRSSLNARDI PQDEFNMLAD 420 YEQQQLLNEY SNSLSRSGRM KSMPPSNLED LFSAEGSSSP RFTDSALASA VFSPTHKSAM 480 FNQFQQQQQQ QQSMLSPINT SFSSPKSVDH SLFSGGGRMS PRNVVEPISP MSARVSMLAQ 540 CVKQQQQQQQ QQQQQQHQFR SLSSRELRTN TSPIVGSPVN NNSWSSQWGS SNGKPDWGMS 600 SEPLGKMRTC SFDGDEPDVS WVQSLVKETP NEAKEKVAAA SSSGGENAVE PVMDHAGLEA 660 WIEQMQLDQL VAQQN

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MNHLRVETED TFASLLELAA NNDVEGVRLS IERDPSCVDE PGLWYGRQKG SKAMVNDQRT  60
PLMVAATYGS IDVIKLIVSL TDANVNRACG NDQTTALHCA ASGGAVNAIQ VVKLLLAAGA  120
DLNVLDGEGQ RAGDVIVVPP KLEGVKLMLQ ELLSADGSRN LRVVTNVLNR STSPPQSPVG  180
ENGEYGSGSP LGSPFKLKST EFKKEYPVDP SLPDIKNSIY ATDEFRMYSF KVRPCSRAYS  240
HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY  300
RTRLCKDGTS CARRVCFFAH TPDELRPLYA STGSAVPSPR SNADYAAALS LLPGSPSGVS  360
VMSPLSPSAA GNGMSHSNMA WPQPNVPALH LPGSNLQSSR LRSSLNARDI PQDEFNMLAD  420
YEQQQLLNEY SNSLSRSGRM KSMPPSNLED LFSAEGSSSP RFTDSALASA VFSPTHKSAM  480
FNQFQQQQQQ QQSMLSPINT SFSSPKSVDH SLFSGGGRMS PRNVVEPISP MSARVSMLAQ  540
CVKQQQQQQQ QQQQQQHQFR SLSSRELRTN TSPIVGSPVN NNSWSSQWGS SNGKPDWGMS  600
SEPLGKMRTC SFDGDEPDVS WVQSLVKETP NEAKEKVAAA SSSGGENAVE PVMDHAGLEA  660
WIEQMQLDQL VAQQN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK37035.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY037232	0.0	AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	AY093957	0.0	AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	U90439	0.0	U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411461.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A087H4I3	0.0	A0A087H4I3_ARAAL; Uncharacterized protein
STRING	A0A087H4I3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]