PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36945.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 288aa    MW: 31548.5 Da    PI: 7.6619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36945.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.5e-27162222259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dD ++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ ++Y+g+H+++
  KFK36945.1 162 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVIYRGSHTCH 222
                 8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-26154222IPR003657WRKY domain
SuperFamilySSF1182904.05E-25158223IPR003657WRKY domain
SMARTSM007749.9E-36161223IPR003657WRKY domain
PROSITE profilePS5081119.439162224IPR003657WRKY domain
PfamPF031063.5E-25162222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSMIFHGFKL VKELESNLPE KRPESLSVSL DEIAKTFDDA NERLKIALGI KNSETVLNQS  60
KPVMIASGSD QMLMHIEPGL MQEYWSRCGG FPSAQGTEAM VQRQLMAVDG GGGRNLTVVE  120
GSSGAGSGSS TPKKGRRKDE GEEKTVFLVA ALRTGNTDLP PDDNHTWRKY GQKEILGSRF  180
PRAYYRCTHQ KLYNCPAKKQ VQRLNDDPFT FRVIYRGSHT CHIYSTAPTA SAAAQTVPIS  240
SAVTTTGHTV DYAPALLDMA DAMFGSSGIG SNMDFIFPSN DSSQHHHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20162221968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879888.11e-163WRKY transcription factor 55
SwissprotQ9SHB51e-157WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A087H4930.0A0A087H493_ARAAL; Uncharacterized protein
STRINGA0A087H4930.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-141WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]