PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36461.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 356aa    MW: 39672.8 Da    PI: 9.3345
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36461.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.94e-161798272
    trihelix  2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
                Wt  e+l+Liea++ +eer  r +             + +W+++ ++++++g+ r+++qC++kw+nl ++ykki+e e+ r 
  KFK36461.1 17 WTVTETLVLIEAKKMDEERRVRPStglppekqpnrPSELRWKWIEEYCWKKGCLRNQNQCNDKWDNLMRDYKKIREYERWRV 98
                *************9888777764335556666666999**************************************998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.748984IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-41086IPR009057Homeodomain-like
PfamPF138371.7E-121698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MADPSSSNMR EYRKGNWTVT ETLVLIEAKK MDEERRVRPS TGLPPEKQPN RPSELRWKWI  60
EEYCWKKGCL RNQNQCNDKW DNLMRDYKKI REYERWRVES SFSTAASSSS SPATPYWKME  120
KGERKEKSLP SNMLSQIYER LSELVEKKSL PSSSSASAAG AVVGNGSYSG GQIFNVCKQS  180
LGPMIAQPLH QIQATTIVLP LPPPPPPPSR QQPLVLSQPP LFQTPPSTFH VEPIQQPIVD  240
TSPAKRRRTT PGETTAGGDG EAEEVAVGAA LSRSASVIAQ VMKESDERQE MRHKEMVMMQ  300
ERRLKIEESK AEVNRQGMNG LVDAISKLAT SIHALASSSS STSTCHNNQN HQGSAP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410730.21e-152uncharacterized protein LOC18027116
TrEMBLA0A087H2V90.0A0A087H2V9_ARAAL; Uncharacterized protein
STRINGA0A087H2V90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-109Trihelix family protein