PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36252.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 350aa    MW: 39886.5 Da    PI: 9.5967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36252.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19184234256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  KFK36252.1 184 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 234
                 59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-31183243No hitNo description
SuperFamilySSF541711.5E-22184242IPR016177DNA-binding domain
SMARTSM003808.2E-36184247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-32184242IPR001471AP2/ERF domain
PROSITE profilePS5103222.8184241IPR001471AP2/ERF domain
PfamPF008471.4E-12185234IPR001471AP2/ERF domain
PRINTSPR003673.6E-11185196IPR001471AP2/ERF domain
PRINTSPR003673.6E-11207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEDQFPKIET SFMHEKLFSS GFYGILSSST QPQLFGVPRI LELGMKSPLP SSSASYFVSP  60
HDHELMTSSI HQSPVPWNFL ESFPQYQHPN HHSSKPPNLS LFLKEPKLLE LSQSDSNMSI  120
PYHNYIPNSL HQSDQNINEW VEINKTLTNY PSKGFENYWL STTKTQPMKS KTRKVAQTTT  180
PTKLYRGVRQ RHWGKWVAEI RLPRNRTRVW LGTFETAEQA AMAYDTAAYI LRGEYAHLNF  240
PDLKNQLKSG SLRCMIASLL ESKIQQISSS QVISSGNSPS SPPKVETLEP KNHIRATKFD  300
GKMKIEAGEV MMKKQKIHKE VIEGDGVQLS RMPSLDMDLI WDALSLPFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21183241160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-21183241463ATERF1
3gcc_A4e-21183241463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440558.10.0PREDICTED: ethylene-responsive transcription factor ERF062
RefseqXP_020874943.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A087H2A00.0A0A087H2A0_ARAAL; Uncharacterized protein
STRINGA0A087H2A00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein