PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK35799.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

FAR1

Protein Properties

Length: 699aa MW: 81032.2 Da PI: 7.115

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK35799.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.7	1.5e-21	95	178	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH l KFK35799.1 95 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVMLDHNHLL 178 69***************************************9988.....999******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-19	95	178	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-24	293	385	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	580	616	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-4	588	612	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	591	618	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MERSESGDGD VEATSVYLQT EEIHEGDDDP MSLRIGEALV CSSDHEIDIG FSQRKTEEET 60 RVFDDEQIGL LPLDSKEFDA PAIGMEFESY DDAYNYYNCY ATEVGFRVRV KNSWFKRRSK 120 EKYGAVLCCS SQGFKRINDV NRVRKETRTG CPAMIRMRQV DSKRWRVLEV MLDHNHLLGS 180 TVYKSVKTKR KCVSSPVSDS KTIKLYRTHV MDTENNVNLN TTVKRQFQYS AGSPDTLSLR 240 RGDSAAIYNY FCRMQLTNPN FFYLMDVNDE GRLRNVFWAD GFSKVSCSYF GDVVFIDNTY 300 ISAKFEIPLV TLSGVNHHGK TTLLSCGLLA GETVESYHWL LKVWLSVMKC APQTIVTDRC 360 KPLEAAISQV FPRSNHRFSL THIMRKIPEK LGGLHNYDGV RKAFTKAVYE TLKVVEFEAA 420 WGFMVHNYGV IDNEWLRTLY EDRARWAPVY LKDTYFAGIA AARPGETLNP FFERYIHKQT 480 PLKEFLDKYE LALQKKHKKE TLSDIESLTL NNTELKTKCS FETQLSRIYT KDMFKKFQVE 540 VEEMYSCFST TQLHIDGPFV IFLVKERVQS ESNRREIRDF EVLYNRSVGE VRCICSCFNF 600 YGYLCRHALC VLNFNGVEEL PMRYILPRWR KDYKRIHGVD NGSSGFVDGM DRVQWFDQLY 660 KNALQVVEGG MVSLDHYKVA MQVLEQSLDT VFSVEEKHD

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MERSESGDGD VEATSVYLQT EEIHEGDDDP MSLRIGEALV CSSDHEIDIG FSQRKTEEET  60
RVFDDEQIGL LPLDSKEFDA PAIGMEFESY DDAYNYYNCY ATEVGFRVRV KNSWFKRRSK  120
EKYGAVLCCS SQGFKRINDV NRVRKETRTG CPAMIRMRQV DSKRWRVLEV MLDHNHLLGS  180
TVYKSVKTKR KCVSSPVSDS KTIKLYRTHV MDTENNVNLN TTVKRQFQYS AGSPDTLSLR  240
RGDSAAIYNY FCRMQLTNPN FFYLMDVNDE GRLRNVFWAD GFSKVSCSYF GDVVFIDNTY  300
ISAKFEIPLV TLSGVNHHGK TTLLSCGLLA GETVESYHWL LKVWLSVMKC APQTIVTDRC  360
KPLEAAISQV FPRSNHRFSL THIMRKIPEK LGGLHNYDGV RKAFTKAVYE TLKVVEFEAA  420
WGFMVHNYGV IDNEWLRTLY EDRARWAPVY LKDTYFAGIA AARPGETLNP FFERYIHKQT  480
PLKEFLDKYE LALQKKHKKE TLSDIESLTL NNTELKTKCS FETQLSRIYT KDMFKKFQVE  540
VEEMYSCFST TQLHIDGPFV IFLVKERVQS ESNRREIRDF EVLYNRSVGE VRCICSCFNF  600
YGYLCRHALC VLNFNGVEEL PMRYILPRWR KDYKRIHGVD NGSSGFVDGM DRVQWFDQLY  660
KNALQVVEGG MVSLDHYKVA MQVLEQSLDT VFSVEEKHD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK35799.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868132.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A087H0Z7	0.0	A0A087H0Z7_ARAAL; Uncharacterized protein
STRING	A0A087H0Z7	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]