PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK35761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 31087.3 Da PI: 9.2977 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.3 | 1e-51 | 16 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...k 96 lppGfrFhPtdeelv++yLk+k+++ +l++ +i++v++yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ + KFK35761.1 16 LPPGFRFHPTDEELVTHYLKPKTDSIPLPV-AIIADVNLYKFDPWELPEKALFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTgdgG 113 79****************************.88***************8888899***************************************99988 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kk Lvfy+g+ pkg+k+dW+mheyrl KFK35761.1 114 SKKIGVKKALVFYTGKPPKGVKSDWIMHEYRL 145 899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-65 | 12 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.115 | 16 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-28 | 17 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MESTDSSGGP PSQPNLPPGF RFHPTDEELV THYLKPKTDS IPLPVAIIAD VNLYKFDPWE 60 LPEKALFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVISTG DGGSKKIGVK 120 KALVFYTGKP PKGVKSDWIM HEYRLIDNKP SFRCDYGNKK NSLRLDDWVL CRIYKKNIIF 180 ADNNDPAAMY DGGGGSGVGN YFLNHNFASS SSGPKPEQLL PPMMMMRSLN QDPTVLGSSS 240 KRFNGGDLTP VQPLMQQQGG ILGEGLIKTS YQLPGLNWYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-72 | 12 | 177 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00201 | DAP | Transfer from AT1G52880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK35761.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392856.2 | 1e-136 | NAC domain-containing protein 18 | ||||
Swissprot | Q9ZNU2 | 1e-117 | NAC18_ARATH; NAC domain-containing protein 18 | ||||
TrEMBL | A0A087H0V9 | 0.0 | A0A087H0V9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H0V9 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52880.1 | 1e-114 | NAC family protein |