PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35246.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 305aa    MW: 33607.6 Da    PI: 8.5005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35246.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18157211256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  KFK35246.1 157 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 211
                 788899***********************************************98 PP
2HD-ZIP_I/II122.91.5e-39157246191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
   KFK35246.1 157 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-AL 246
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.4E-351116IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.0E-19137211IPR009057Homeodomain-like
SuperFamilySSF466894.71E-19137214IPR009057Homeodomain-like
PROSITE profilePS5007117.313153213IPR001356Homeobox domain
SMARTSM003892.6E-15155217IPR001356Homeobox domain
PfamPF000463.8E-16157211IPR001356Homeobox domain
CDDcd000869.99E-14157214No hitNo description
PROSITE patternPS000270188211IPR017970Homeobox, conserved site
SMARTSM003401.6E-26213256IPR003106Leucine zipper, homeobox-associated
PfamPF021835.5E-11213247IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGERDDGLGL SLSLGLGFNQ KEQSPRLNPM QFGSYSSSSS HMHMQSNHIN HSQKIQNSWT  60
HMFQSSERNS DVRSFLRGID VNRAPSTVVV DVEEDAGVSS PNSTVSSVMS GKRNERVATV  120
VGGGGVIEDH DVERASSSLG GGSDDEDGGG NGDDGSRKKL RLSKEQALVL EETFKEHSTL  180
NPKQKMALAK QLNLRTRQVE VWFQNRRART KLKQTEVDCE YLKRCCENLT EENRRLQKEV  240
SELRALKLSP HLYMHMKPPT TLTMCPSCER VAATSSSSSV APPAMNSSSP WAAIPLRQRP  300
AAGSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161SRKKLRL
2205213RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469193.11e-170PREDICTED: homeobox-leucine zipper protein HAT3
SwissprotP466021e-167HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A087GZE40.0A0A087GZE4_ARAAL; Uncharacterized protein
STRINGA0A087GZE40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-124homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]