PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35034.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARR-B
Protein Properties Length: 545aa    MW: 60406.6 Da    PI: 6.2014
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35034.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.54.7e-26189242155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++WtpeLH++F+ av+ L G e+A+Pk+il+lm+v+ Lt+e+v+SHLQk+R 
  KFK35034.1 189 KPRVVWTPELHKKFIGAVDLL-GLEHAVPKKILDLMNVDKLTRENVASHLQKFRA 242
                 79*******************.9*******************************6 PP
2Response_reg85.22e-28151231109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+++ +++l+++l + +y +v+++ +++ alell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++++++ + +  Ga 
    KFK35034.1  15 VLAVDDDQTCLRILQTLLHRCQY-HVTTTNQAQTALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVTHGAC 109
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
    KFK35034.1 110 DYLLKPVRIEELKN 123
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1581543IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.7E-4312156No hitNo description
SuperFamilySSF521723.27E-3612138IPR011006CheY-like superfamily
SMARTSM004482.0E-3313125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.95714129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2515123IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.72E-2816128No hitNo description
PROSITE profilePS5129411.849186245IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-27186247IPR009057Homeodomain-like
SuperFamilySSF466898.96E-19187246IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24189242IPR006447Myb domain, plants
PfamPF002492.0E-6191240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MTVGALDQFP VGMRVLAVDD DQTCLRILQT LLHRCQYHVT TTNQAQTALE LLRENKNKFD  60
LVISDVDMPD MDGFKLLELV GLEMDLPVIM LSAHSDPKYV MKGVTHGACD YLLKPVRIEE  120
LKNIWQHVVR KGKLQKKKMK QISVSNGESS EYSDQNGVKA NRKRKDQYEE EEEEEERGNE  180
NDDPTAQKKP RVVWTPELHK KFIGAVDLLG LEHAVPKKIL DLMNVDKLTR ENVASHLQKF  240
RAALKKIQDD ANQQANMALA NSHYMRMGSL NGGFHHSIPY GSSQFHGGAA TMRHYRSNGA  300
LGRRNSPAGM FQHTSSLPFS NNNGRNILQG LPISPLGELQ TNNNNNNNNN NRSTGFPSFS  360
SQQSSLMVAP NNHLVLDGNP QSSSPGFSPH FEMNTPLDEH WSNAVSSTNI PQSNVHSKPD  420
NLEWNLLCDS ASPLIDPNLD ANPTSLYGNT GFGSTNAAQP DFFDLLEMKQ QPVNNSGPVT  480
DAQLLSSSHL KEGLLMGQQK QQSGFMASDA GSFDDIFNSM MTQEQSQTDF SGGDLGWLST  540
LGTCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-29185247163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00072SELEXTransfer from AT4G31920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194920.10.0response regulator 10
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLA0A087GYT20.0A0A087GYT2_ARAAL; Two-component response regulator
STRINGA0A087GYT20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  4. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  5. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  6. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  10. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  11. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  12. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]