PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK34569.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 29637.8 Da PI: 5.7427 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde+lv+ v++lG ++W++ ar g++R++k+c++rw +yl KFK34569.1 11 RGPWLEEEDERLVKFVNLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 65 | 107 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ ++eE+ +++++++++G++ W++Iar+++ gRt++++k++w++ KFK34569.1 65 GPISQEEEMIILELHALWGNK-WSKIARRLP-GRTDNEIKNYWRT 107 6789*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.055 | 6 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.47E-28 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.15E-9 | 13 | 58 | No hit | No description |
SMART | SM00717 | 8.8E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.235 | 63 | 113 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-14 | 65 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-9 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDCKEEETLR RGPWLEEEDE RLVKFVNLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP 60 NLKHGPISQE EEMIILELHA LWGNKWSKIA RRLPGRTDNE IKNYWRTNFR KKGEAHNYGK 120 HKNDVFDGDK IIGWRGNTGE EVLRKYKETE TTSKTQEHDF DEIVNKRSME SDKETNGGIC 180 ERESFGVMNS PYENRISDWI SEISTDQSEA NHFEASSSCN NENNNKNNLN IGSWWFQETR 240 DFEEFSCSLW S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-27 | 9 | 112 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-26 | 9 | 112 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-26 | 9 | 112 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-27 | 9 | 112 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-27 | 9 | 112 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK34569.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117256 | 1e-109 | AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10. | |||
GenBank | AY519599 | 1e-109 | AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds. | |||
GenBank | BT005257 | 1e-109 | BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603906.1 | 1e-132 | PREDICTED: transcription factor MYB59 | ||||
Refseq | XP_022563629.1 | 1e-132 | transcription factor MYB27-like | ||||
Swissprot | Q9SCP1 | 1e-128 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A087GXG7 | 0.0 | A0A087GXG7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GXG7 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11397 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 1e-126 | myb domain protein 27 |
Publications ? help Back to Top | |||
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