PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33401.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARR-B
Protein Properties Length: 359aa    MW: 40625.5 Da    PI: 8.7111
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33401.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.5e-26185238155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k r++W+ +LH++Fv+av+qL G+ekA+Pk+ilelm+ ++L++e+v+SHLQk+Rl
  KFK33401.1 185 KSRVVWSIDLHQQFVNAVNQL-GIEKAVPKRILELMNAPSLSRENVASHLQKFRL 238
                 68*******************.********************************8 PP
2Response_reg71.53.5e-24131211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+++l +  y +v+ ++++e al+ll+ek+  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++   ++ Ga 
    KFK33401.1  13 VLVVDDDTSCLIILEKMLLRLMY-QVTICSQAEVALTLLREKKgsFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTSTVMTGINNGAC 107
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  eel +
    KFK33401.1 108 DYLIKPIRYEELKN 121
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.2E-1382357IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.6E-3910149No hitNo description
SuperFamilySSF521722.42E-3310135IPR011006CheY-like superfamily
SMARTSM004489.6E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.47512127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.32E-2514126No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26182243IPR009057Homeodomain-like
SuperFamilySSF466893.4E-17183242IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-23185238IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAICDQFPYG LRVLVVDDDT SCLIILEKML LRLMYQVTIC SQAEVALTLL REKKGSFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTSTVMT GINNGACDYL IKPIRYEELK  120
NIWQHVVRKK CTMNKKVPRN LEDNSSLETV VSVSECLEGS MKRRKKKKKR SVDREDVDDD  180
NNSKKSRVVW SIDLHQQFVN AVNQLGIEKA VPKRILELMN APSLSRENVA SHLQKFRLYM  240
KRLSGVDSQS SDSESMKRCE NIQDLVSSGQ IHPQTLAALY GRPIDNDMSG GFGAWLPNDN  300
NLDVSSVSNR GFGAVRGLST SANLRQQCDD FIKQGNGSNV NEESWNFERS SRPRKNHRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19184244464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161169KRRKKKKKR
2162168RRKKKKK
3163169RKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33401.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881491e-118AY088149.1 Arabidopsis thaliana clone 41875 mRNA, complete sequence.
GenBankAY0997261e-118AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288871e-118AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395852.20.0LOW QUALITY PROTEIN: two-component response regulator ARR14
SwissprotQ8L9Y31e-179ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A087GU490.0A0A087GU49_ARAAL; Two-component response regulator
STRINGA0A087GU490.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-161response regulator 14