PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK32838.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

CAMTA

Protein Properties

Length: 1033aa MW: 116465 Da PI: 5.257

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK32838.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	180.9	1.5e-56	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n++fqrr+yw KFK32838.1 20 SEaRNRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQRRSYW 118 4449********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 +L+eel++iv+vhylevk KFK32838.1 119 MLQEELSNIVFVHYLEVK 136 *************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.079	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.8E-84	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.8E-49	21	135	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.49E-16	462	547	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.5E-14	625	754	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.441	625	751	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.15E-15	637	754	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.37E-10	639	751	No hit	No description
PROSITE profile	PS50088	8.71	692	724	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	6.9E-8	852	904	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.4	853	875	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.139	855	883	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	856	874	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.023	876	898	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.048	877	901	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.8E-4	879	898	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MAEARRFSPN HELDVEQILS EARNRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWML 120 QEELSNIVFV HYLEVKGSRV STSYNRMQRT EDAVRSPQET GEVLTSERDG YASYSINQYD 180 HSNHSHATDS ASVNGVHTPE LEDVESAYNQ QANSIVYSHQ EFQQPATTGF DPYYQMTLTP 240 RDSYRKELRT IPVIDSSIMV DRSKTINGPG VANGLRNKKS IDSQSWEEIL GNCGSGTEGL 300 PMQPNSKNEV LDEMLQSSAF TMQDFASLQE SMVKSQNQEL HPGLASDRTV WFEGQDMELN 360 TISNLASNEK APYLSTMKQH LLDGALGEEG LKKMDSFNRW MSKELGDVGV IADANESFTQ 420 SSSRTYWEEV ESEDGSNGHN SRRDLDGYVM SPSLSKEQFF SIIDFSPSWT YVGCEVQVLV 480 TGKFLKTREE AEIGEWSCMF GQTEVRADVI ANGVLQCVAP MHEAGRVPFY VTCSNRLACS 540 EVREFEYKVV ESQVFDRETD ESTTIGILEA RFIKLLCSKS DCPSASLSGN DSDLSQVSQK 600 ISLLLFENDD QLDQMLMNEI SQENMKNNLL RDALKESLHS WLLQKIAEGG KGPNVLDEGG 660 QGILHFAAAL GYNWALEPTI VAGVSVDFRD VNGWTALHWA AFFGRELVIG SLIALGAAPG 720 TLTDPNPDFP SGSTPSDLAY ANGYKGIAGY LSEYALRAHL SLLSLNDKNA ESPLAAVETA 780 PSPSSSSLTD SLTAVRNATQ AAARIHQVFR AQSFQKKQIK EFGDRKFGMS EERALSMLAP 840 KTHKPGRAHS DDSVQAAAIR IQNKFRGYKG RKEYLITRQR IIKIQAHVRG YQFRKNYRKI 900 VWSVGILEKV ILRWKRKGAG LRGFKSEALV DKMQDGTEKE EDDDFFKQGR KQTEERLEKA 960 LARVKSMVQY PEARDQYRRL LNVVNDIQES KVEKALDSSE DAICFDDDLI DIESLLEDDE 1020 TLMLPMSSTM WAS

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MAEARRFSPN HELDVEQILS EARNRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWML  120
QEELSNIVFV HYLEVKGSRV STSYNRMQRT EDAVRSPQET GEVLTSERDG YASYSINQYD  180
HSNHSHATDS ASVNGVHTPE LEDVESAYNQ QANSIVYSHQ EFQQPATTGF DPYYQMTLTP  240
RDSYRKELRT IPVIDSSIMV DRSKTINGPG VANGLRNKKS IDSQSWEEIL GNCGSGTEGL  300
PMQPNSKNEV LDEMLQSSAF TMQDFASLQE SMVKSQNQEL HPGLASDRTV WFEGQDMELN  360
TISNLASNEK APYLSTMKQH LLDGALGEEG LKKMDSFNRW MSKELGDVGV IADANESFTQ  420
SSSRTYWEEV ESEDGSNGHN SRRDLDGYVM SPSLSKEQFF SIIDFSPSWT YVGCEVQVLV  480
TGKFLKTREE AEIGEWSCMF GQTEVRADVI ANGVLQCVAP MHEAGRVPFY VTCSNRLACS  540
EVREFEYKVV ESQVFDRETD ESTTIGILEA RFIKLLCSKS DCPSASLSGN DSDLSQVSQK  600
ISLLLFENDD QLDQMLMNEI SQENMKNNLL RDALKESLHS WLLQKIAEGG KGPNVLDEGG  660
QGILHFAAAL GYNWALEPTI VAGVSVDFRD VNGWTALHWA AFFGRELVIG SLIALGAAPG  720
TLTDPNPDFP SGSTPSDLAY ANGYKGIAGY LSEYALRAHL SLLSLNDKNA ESPLAAVETA  780
PSPSSSSLTD SLTAVRNATQ AAARIHQVFR AQSFQKKQIK EFGDRKFGMS EERALSMLAP  840
KTHKPGRAHS DDSVQAAAIR IQNKFRGYKG RKEYLITRQR IIKIQAHVRG YQFRKNYRKI  900
VWSVGILEKV ILRWKRKGAG LRGFKSEALV DKMQDGTEKE EDDDFFKQGR KQTEERLEKA  960
LARVKSMVQY PEARDQYRRL LNVVNDIQES KVEKALDSSE DAICFDDDLI DIESLLEDDE  1020
TLMLPMSSTM WAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK32838.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF506697	0.0	AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBank	AY510025	0.0	AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBank	BT002459	0.0	BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014331.1	0.0	calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A087GSI6	0.0	A0A087GSI6_ARAAL; Uncharacterized protein
STRING	A0A087GSI5	0.0	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]