PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK32565.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

ERF

Protein Properties

Length: 197aa MW: 22055.5 Da PI: 4.4754

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK32565.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.9	1.9e-16	23	72	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G r ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g KFK32565.1 23 VYRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 72 699999988.********843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.5E-35	23	86	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.037	23	80	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-10	23	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-20	23	80	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.5E-31	23	81	IPR001471	AP2/ERF domain
CDD	cd00018	1.56E-32	24	82	No hit	No description
PRINTS	PR00367	2.8E-10	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MESNGSDTEC SSRKKRKDSS TKVYRGARMR SWGKWVSEIR EPRKKSRIWL GTFPTAEMAA 60 RAHDVAALSI KGSSAILNFP ELSDYLPRPV SLSPSDIQDA ANKAALMDFK TPSLTSNETE 120 MNEKASSSSS TLSEELGEIV ELPNLDNELN NDFAMYNSLD GLVSMPPWLD ATKEDFTYGD 180 DSVLLDSLYQ ESLYWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	24	81	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	17	RKKRKD

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK32565.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought. {ECO:0000269\|PubMed:16307362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472602.1	1e-100	PREDICTED: ethylene-responsive transcription factor ERF042-like
Swissprot	Q52QU1	9e-87	ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBL	A0A087GRR3	1e-141	A0A087GRR3_ARAAL; Uncharacterized protein
STRING	A0A087GRR3	1e-142	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25820.1	3e-76	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]