PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32291.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 420aa    MW: 46596.4 Da    PI: 7.0047
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32291.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-17116165155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KFK32291.1 116 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 165
                 78*******************......55************************997 PP
2AP2409.6e-13208255152
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ +
  KFK32291.1 208 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIN 255
                 89********.7******5553..2.26**********99*********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-16116174IPR016177DNA-binding domain
PfamPF008474.6E-9116165IPR001471AP2/ERF domain
CDDcd000185.44E-11117175No hitNo description
PROSITE profilePS5103217.82117173IPR001471AP2/ERF domain
SMARTSM003804.3E-33117179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17117173IPR001471AP2/ERF domain
PfamPF008473.4E-8208255IPR001471AP2/ERF domain
CDDcd000182.77E-23208268No hitNo description
SuperFamilySSF541713.73E-16208267IPR016177DNA-binding domain
SMARTSM003802.6E-29209272IPR001471AP2/ERF domain
PROSITE profilePS5103215.237209266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-15209267IPR001471AP2/ERF domain
PRINTSPR003671.3E-5210221IPR001471AP2/ERF domain
PRINTSPR003671.3E-5248268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLDLNLDAES TQYVDRQTSD GLEESGTSTS SVINADGDEE SCSFTLSFDI LKVGGGDESP  60
ASVTKEFFPV AGDCGHLRDA EGSSSRSWID LGETKLVAPV PAPVKKSRRG PRSRSSQYRG  120
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFTLSDYQED  180
MKQVQNLSKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  240
SEVEAARAYD KAAINSNGRE AVTNFELSSY QNETNDNGVH DKLDLNLGIS LSPGNATKQN  300
GRLFHVPSNT YETQRGVSLR IDNEFMGKPV NTSLPYGSLD HRVYWNGACP SYNNAVEGRA  360
TEKRSEGEGM MSNWGWQTSA VRPQPPPPLF SVAAASSGFS HFRQQTPNDN ASRAYFYPQP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32291.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031001e-110AF003100.1 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds.
GenBankAF3250741e-110AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0508151e-110AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0914181e-110AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296222.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A087GQY90.0A0A087GQY9_ARAAL; Ethylene-responsive transcription factor rap2-7
STRINGA0A087GQY90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7