PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31544.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 264aa    MW: 30035.2 Da    PI: 6.8619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31544.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-071481851355
                 HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R+++ +++  L +++P+      kK+s a+iLe++ +YI  Lq
  KFK31544.1 148 RKKVSDKIRSLEKVIPWE-----KKMSLATILEETHKYITFLQ 185
                 899**************9.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.178135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-4148189No hitNo description
SuperFamilySSF474598.64E-8148191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-8148190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEYEFDSLTE LPPLPIIESL PPLPTSDFIT PPSFFSDHHY NNHVQDLLNL HQHVPDSVFL  60
DSTLSLLTRH QISESTRLDN LFNAVFSDEA TTPFLHLPHL KSFEDQKPPS PFLLSLSPKR  120
RCLSNISPSS SSNSGSPAGT SFYAIDGRKK VSDKIRSLEK VIPWEKKMSL ATILEETHKY  180
ITFLQSQIAS LLWMPLDSAY TNTTGRDHVR ETQLLKFLTR QQILQVITNS PGVRTELYTR  240
GLCVFSYEQL LSLKMMTQSV KNNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145434.11e-73PREDICTED: transcription factor bHLH117
SwissprotQ9LRJ43e-66BH117_ARATH; Transcription factor bHLH117
TrEMBLA0A087GNU20.0A0A087GNU2_ARAAL; Uncharacterized protein
STRINGA0A087GNU20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.15e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]