PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30669.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 393aa    MW: 44354.9 Da    PI: 7.3463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30669.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13221267354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+Er+RR+++N++f  Lr  +P+       +++Ka+ L+ Av YI sL
  KFK30669.1 221 MSHVEAERQRREKLNHRFYALRAAVPTV-----SRMDKASLLTDAVSYIESL 267
                 68*************************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-3610162IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.825218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10221267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-14221272No hitNo description
SuperFamilySSF474591.01E-16221282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16222283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVSSSPADQL QQKLRFVVET SPDQWAYVIF WQKMTDQSDR SYLVWVDGHF GGNKNNKSEE  60
NHTKNSIESE LTMDGGDLEW FYVTSFQSGD GSPRKEFSGE SLVWLTGPDK LRFSSYERAK  120
EAGFHGVHTF VSIPIQNGII ELGSCDTIKQ SWDFISRVKS IFGSDKSPEH VNQTGSYPKQ  180
VVSDHSEVGN QEAKKERKRK SSKIKKTVAV TVEKQNIPAA MSHVEAERQR REKLNHRFYA  240
LRAAVPTVSR MDKASLLTDA VSYIESLKTK IEVLETQVKR SKTTTDNNDN TASSVDQVNQ  300
KSLESNIVSE FEVQVKIVGE EAMVRVESEN ANHPTLVLMS ALMEMDCCVQ HANVSRFSQI  360
MVQDVVVVVP NGLRSEDRLR TTLVRKLRSL SQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-2381627192Transcription factor MYC3
4rqw_B8e-2381627192Transcription factor MYC3
4rs9_A8e-2381627192Transcription factor MYC3
4yz6_A8e-2381627192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872924.10.0transcription factor bHLH14
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLA0A087GLB70.0A0A087GLB7_ARAAL; Uncharacterized protein
STRINGA0A087GLB70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]