PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK30603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 22804.4 Da PI: 5.007 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.4e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +e+ +++f +vhk+FGasn kll+++p ++r da+ +l yeA ar++dPvyG+vg+i++lq+q+++l+aela+ + KFK30603.1 7 PCGACKFLRRKCVAECIFAPYFDSEEgAAHFTAVHKVFGASNAAKLLSTVPASQRLDAVVTLSYEAFARLSDPVYGCVGHIFALQHQVMNLQAELAYFQ 105 7*********************998879********************************************************************988 PP DUF260 99 ee 100 ++ KFK30603.1 106 TH 107 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.707 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-38 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSAGGSPCGA CKFLRRKCVA ECIFAPYFDS EEGAAHFTAV HKVFGASNAA KLLSTVPASQ 60 RLDAVVTLSY EAFARLSDPV YGCVGHIFAL QHQVMNLQAE LAYFQTHLSA LQRIPPPNPQ 120 KNSPPEAASS SNVSLIAYFD DNNNNNNNNR SNVSMSQQQE DIKVSAESLD FSSLLGLEDP 180 ADEDGDLNAL AREFLSKYLN GGKCRESPPS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 5 | 108 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 5 | 108 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK30603.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879137.1 | 1e-109 | LOB domain-containing protein 31 | ||||
Swissprot | O81322 | 1e-100 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A087GL51 | 1e-154 | A0A087GL51_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GL51 | 1e-155 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 3e-94 | LOB domain-containing protein 31 |