PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30389.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31152 Da    PI: 8.741
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30389.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18125179256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tk+q   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  KFK30389.1 125 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 179
                 78889************************************************98 PP
2HD-ZIP_I/II122.52.1e-39125213190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+k+q++lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +
   KFK30389.1 125 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKKCCETLTDENRRLQKELQDLK-A 213
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.119121181IPR001356Homeobox domain
SuperFamilySSF466892.91E-18122189IPR009057Homeodomain-like
SMARTSM003891.4E-15123185IPR001356Homeobox domain
CDDcd000862.13E-15124182No hitNo description
Gene3DG3DSA:1.10.10.606.0E-17125179IPR009057Homeodomain-like
PfamPF000468.9E-16125179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PfamPF021831.5E-9181214IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.3E-24181224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSPT PNNYNHVIKK SSTTVDHRLI RLDPSLTLSL SGESYKNKTV  60
TGAGDQIYRQ TSSHSGISSF SSGRVKRERE IGGGDGEDEA EETTERVVCS RVSDDHEDEE  120
GVSPRKKLRL TKQQSALLEE SFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL  180
KQTEVDCEHL KKCCETLTDE NRRLQKELQD LKALRLSQPF YMHMPAATLT MCPSCERLGG  240
GGGGGGAGGG GGGTVVGVDG GTVKGAFSIV TKPRFYNPFT NPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU093360.0U09336.1 Arabidopsis thaliana clone HAT22 homeobox protein mRNA, complete cds.
GenBankAY0875630.0AY087563.1 Arabidopsis thaliana clone 36691 mRNA, complete sequence.
GenBankBT0023180.0BT002318.1 Arabidopsis thaliana clone C105403 putative homeobox protein HAT22 (At4g37790) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874925.11e-165homeobox-leucine zipper protein HAT22
SwissprotP466041e-165HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A087GKI70.0A0A087GKI7_ARAAL; Uncharacterized protein
STRINGA0A087GKI70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-151HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]