PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK29757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | B3 | ||||||||
Protein Properties | Length: 408aa MW: 47388.1 Da PI: 9.3738 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.6 | 2.6e-14 | 22 | 98 | 11 | 95 |
HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + s+ l++p +f ++h g +k++ ++ l++ s ++W+vk ++++ lt GWk+F+ a++ ++gD++vFk++g +f ++v+ KFK29757.1 22 FHSH-LSIPVDFYSKHieGRNKKN--MVELTSdASEKTWKVKR--EGRK----LTLGWKDFAVAHDYRVGDIIVFKHQG--DFVFHVT 98 4555.***********96555444..5666654999*******..8888....9**********************766..5644655 PP | |||||||
2 | B3 | 70.3 | 2.5e-22 | 181 | 267 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ++l+++ + lpkkf+ + g++ +++l+de r+W+++l++r +s++++++ GW++F+++n Lk gD+v+Fk ++++++++v+++ KFK29757.1 181 RVTDSNLREDTMFLPKKFVWSKGSN-----KIILMDEGERKWTLNLRFRESSRTFYMSHGWRNFCHENMLKPGDSVTFKQENDNTKTPVIRF 267 6788999************999877.....6************************************************8777888888876 PP | |||||||
3 | B3 | 50.8 | 3.1e-16 | 306 | 405 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 f++ ++++++ k++rl+lp +f++ h++++ ++k++++ d++g +W v+++ +k+ r +G k F ka ++k +++v++l+++ ++ + +k+++ KFK29757.1 306 FVTLTVTPSSYKKSRLYLPASFTRIHKMENVRGKKIIMLDKHGVEWPVYVCLDKRYTRLRCYSGVKAFFKAIDIKPDESFVLELVWEdKTSPPILKFCS 404 77788999999999************99999******************************************************99899999999998 PP S CS B3 99 k 99 k KFK29757.1 405 K 405 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.84E-19 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.871 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.44E-13 | 12 | 98 | No hit | No description |
SMART | SM01019 | 7.3E-21 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-9 | 23 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-17 | 170 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-19 | 173 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-24 | 177 | 271 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.34 | 177 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-19 | 180 | 267 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.48E-19 | 184 | 264 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-12 | 299 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-14 | 303 | 395 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-10 | 305 | 393 | No hit | No description |
SMART | SM01019 | 2.8E-19 | 306 | 406 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 306 | 405 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.516 | 306 | 405 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MADQVFESPT NPHFFQPLLP GFHSHLSIPV DFYSKHIEGR NKKNMVELTS DASEKTWKVK 60 REGRKLTLGW KDFAVAHDYR VGDIIVFKHQ GDFVFHVTGL GPSCCEIQYV QPSNDDNDDE 120 EEENIRNLPK KQKLKTEQES LPEDEDKDNM AELQRKKLVK TRIHEGEAES FESDQSCLLV 180 RVTDSNLRED TMFLPKKFVW SKGSNKIILM DEGERKWTLN LRFRESSRTF YMSHGWRNFC 240 HENMLKPGDS VTFKQENDNT KTPVIRFSTS ESKKCVSTKD SSKGKKRKTA ESSQSRVPSA 300 LSETRFVTLT VTPSSYKKSR LYLPASFTRI HKMENVRGKK IIMLDKHGVE WPVYVCLDKR 360 YTRLRCYSGV KAFFKAIDIK PDESFVLELV WEDKTSPPIL KFCSKIKT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK29757.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194894.2 | 1e-103 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q8H2D0 | 1e-104 | REM7_ARATH; B3 domain-containing protein REM7 | ||||
TrEMBL | A0A087GIQ5 | 0.0 | A0A087GIQ5_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GIQ5 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 1e-103 | B3 family protein |
Publications ? help Back to Top | |||
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