PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29757.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 408aa    MW: 47388.1 Da    PI: 9.3738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29757.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-1422981195
                HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                + s+ l++p +f ++h  g +k++  ++ l++  s ++W+vk   ++++    lt GWk+F+ a++ ++gD++vFk++g  +f ++v+
  KFK29757.1 22 FHSH-LSIPVDFYSKHieGRNKKN--MVELTSdASEKTWKVKR--EGRK----LTLGWKDFAVAHDYRVGDIIVFKHQG--DFVFHVT 98
                4555.***********96555444..5666654999*******..8888....9**********************766..5644655 PP

2B370.32.5e-22181267596
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ++ ++l+++ + lpkkf+ + g++     +++l+de  r+W+++l++r +s++++++ GW++F+++n Lk gD+v+Fk ++++++++v+++
  KFK29757.1 181 RVTDSNLREDTMFLPKKFVWSKGSN-----KIILMDEGERKWTLNLRFRESSRTFYMSHGWRNFCHENMLKPGDSVTFKQENDNTKTPVIRF 267
                 6788999************999877.....6************************************************8777888888876 PP

3B350.83.1e-16306405199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                 f++ ++++++ k++rl+lp +f++ h++++ ++k++++ d++g +W v+++ +k+  r    +G k F ka ++k  +++v++l+++ ++  + +k+++
  KFK29757.1 306 FVTLTVTPSSYKKSRLYLPASFTRIHKMENVRGKKIIMLDKHGVEWPVYVCLDKRYTRLRCYSGVKAFFKAIDIKPDESFVLELVWEdKTSPPILKFCS 404
                 77788999999999************99999******************************************************99899999999998 PP

                 S CS
          B3  99 k 99 
                 k
  KFK29757.1 405 K 405
                 6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-188105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-199109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.87111103IPR003340B3 DNA binding domain
CDDcd100171.44E-131298No hitNo description
SMARTSM010197.3E-2114103IPR003340B3 DNA binding domain
PfamPF023621.8E-92395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17170268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-19173271IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-24177271IPR003340B3 DNA binding domain
PROSITE profilePS5086315.34177270IPR003340B3 DNA binding domain
PfamPF023621.2E-19180267IPR003340B3 DNA binding domain
CDDcd100172.48E-19184264No hitNo description
Gene3DG3DSA:2.40.330.108.1E-12299394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-14303395IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-10305393No hitNo description
SMARTSM010192.8E-19306406IPR003340B3 DNA binding domain
PfamPF023621.2E-15306405IPR003340B3 DNA binding domain
PROSITE profilePS508639.516306405IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MADQVFESPT NPHFFQPLLP GFHSHLSIPV DFYSKHIEGR NKKNMVELTS DASEKTWKVK  60
REGRKLTLGW KDFAVAHDYR VGDIIVFKHQ GDFVFHVTGL GPSCCEIQYV QPSNDDNDDE  120
EEENIRNLPK KQKLKTEQES LPEDEDKDNM AELQRKKLVK TRIHEGEAES FESDQSCLLV  180
RVTDSNLRED TMFLPKKFVW SKGSNKIILM DEGERKWTLN LRFRESSRTF YMSHGWRNFC  240
HENMLKPGDS VTFKQENDNT KTPVIRFSTS ESKKCVSTKD SSKGKKRKTA ESSQSRVPSA  300
LSETRFVTLT VTPSSYKKSR LYLPASFTRI HKMENVRGKK IIMLDKHGVE WPVYVCLDKR  360
YTRLRCYSGV KAFFKAIDIK PDESFVLELV WEDKTSPPIL KFCSKIKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29757.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194894.21e-103AP2/B3-like transcriptional factor family protein
SwissprotQ8H2D01e-104REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A087GIQ50.0A0A087GIQ5_ARAAL; Uncharacterized protein
STRINGA0A087GIQ50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-103B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]