PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29599.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 537aa    MW: 58464 Da    PI: 5.7638
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29599.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31297355259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  KFK29599.1 297 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILITTYEGNHNHP 355
                 7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33281357IPR003657WRKY domain
SuperFamilySSF1182907.32E-28289357IPR003657WRKY domain
PROSITE profilePS5081129.712291357IPR003657WRKY domain
SMARTSM007741.5E-36296356IPR003657WRKY domain
PfamPF031067.3E-27298355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MFRFPVSLGG SRDEARHDQI TPLDEHRVVV DEVDFFSDKR DRVSREIINE EDDDEANKVL  60
VKMENSRVED NDRSRDVNIG LNLLTANTGS DESTVDDGLS MDMEDKRAKI ENAQLQEELK  120
KMKIENQRLR EMLSQATNNF NSLQMQLVAV MRQQEQRNSS QDHLLATDSK AEGRKRQEMQ  180
SMVPRQFMDL GPSSGAAEPD AEVSSGERTM VRSGSPPSLL ESSNPREGGK RLLGREESPE  240
SESNPWGNPI KVQKHNPSSS NNNGNGNGNV IDQSAAEATM RKARVSVRAR SEAPMISDGC  300
QWRKYGQKMA KGNPCPRAYY RCTMAGGCPV RKQVQRCAED RSILITTYEG NHNHPLPPAA  360
MAMASTTTAA ASMLLSGSMS SQDGLMNPTN LLARAMLPCS SSMATISASA PFPTITLDLT  420
NPSNGNNPNM TTNNPLMQFA QRPGFNPAVL PQVVGQALYY NQQQSKFSGL QLPTQPLQMA  480
ATSSVAESVS AASAAIASDP NFAAALAAAI TSIINGSSHQ NNNNNNNVAT SNGDNRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23283359176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734026.10.0probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLA0A087GI970.0A0A087GI97_ARAAL; Uncharacterized protein
STRINGA0A087GI970.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31