PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29201.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 370aa    MW: 41759.5 Da    PI: 5.092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29201.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.2e-14955248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT+ Ede l+ +v+++G g+W+++ ++  + R++k+c++rw ++l
       KFK29201.1  9 GPWTAAEDETLAAYVREYGEGNWNAVQKKTWLARCGKSCRLRWANHL 55
                     89*****************************************9986 PP
2Myb_DNA-binding45.12.3e-1461104146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ ++ E+ l+++++ qlG++ W++ a+ ++ gRt++++k++w++
       KFK29201.1  61 KGSISPHEERLIIQLHSQLGNK-WARMAAQLP-GRTDNEIKNYWNT 104
                      57789*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.58155IPR017930Myb domain
SMARTSM007178.1E-10757IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-278102IPR009057Homeodomain-like
PfamPF002498.9E-13955IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-21962IPR009057Homeodomain-like
CDDcd001671.96E-101055No hitNo description
PROSITE profilePS5129422.99956110IPR017930Myb domain
SMARTSM007173.7E-1460108IPR001005SANT/Myb domain
PfamPF002491.6E-1261104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2363108IPR009057Homeodomain-like
CDDcd001672.53E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MILYNNDGGP WTAAEDETLA AYVREYGEGN WNAVQKKTWL ARCGKSCRLR WANHLRPNLR  60
KGSISPHEER LIIQLHSQLG NKWARMAAQL PGRTDNEIKN YWNTRLKRFQ RQGLPLYPPD  120
ILPYNHVQQQ TYLRQPKTPS SPLLSPTPDS SFVFRAPTPP PLCPKRSYNT AFDCLSTNPS  180
YTSSPTAFLL SSPAFLHTHS PPSYQSTNPV YSMKQELPSN QIPYSASLGV YQLLEDVMEE  240
AEALADSCRG PKRRQLMAAP EEDNFFSASF RHCGSSDNLC SLQGNNQTAQ NEEETLQMNT  300
MHDEDIEKLL DWGTESGENS NGQSSVITTE DNLILDELTL LFPVDDDNNN NTNMTPTLYS  360
CSWDNLSGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-2891085103C-Myb DNA-Binding Domain
1msf_C2e-2891085103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253RGPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413125.11e-172transcription factor MYB97
SwissprotQ9S7731e-169MYB97_ARATH; Transcription factor MYB97
TrEMBLA0A087GH490.0A0A087GH49_ARAAL; Uncharacterized protein
STRINGA0A087GH490.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.11e-159myb domain protein 97
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]