PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK29059.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

C2H2

Protein Properties

Length: 641aa MW: 71946.6 Da PI: 9.1349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK29059.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	116	137	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H KFK29059.1 116 KCEKCTREFCSPVNFRRHNRMH 137 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.097	115	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MLFCLALSEF FSHFPFPVPS LSRIFSATFS PPQAASRIAL DPLRSVTVLL WNLMELVKQQ 60 DGNDSLDMLI RRAVGKDPFL SFPRPENSPV QLFQLLHTLE RPGWPLLTPL KIQMQKCEKC 120 TREFCSPVNF RRHNRMHRRL KKPEKDSGKE RDALGAFWNK LSVVEAKEIL SLKTMMLEEV 180 PGASVESGLV SLIERPGYTA LPQYYLRAGS ELLDIVQARP PRFPISSQEL FSILDDASEK 240 TFLSNEAAPI QKYIFDGETG KNVLDAKNVV ACTSFLLEQR LIKAWLADKD AEALRCQNLL 300 VEEEEAARRR QAELLERKKR KKLRQKEHRV KDQKKYAKED VSTTSDEQQY PAESSSPLSL 360 TSDSEAQRSD SIPIEDSSSL EDTQVLEMEN GINGEPQAPM VDGDDFGNSQ TLERRSGRRQ 420 MERSQQGMPN GFHANHAPKP GGMRKNGTSR DSRGNTTKVW TRKSDNPKLI SADAAVTQLD 480 QTKNSEVVIG SLSVTIGNSC ISGEHNQTKC GEEEVRSKTV EAKPGSEQTT AKIWRPVSSQ 540 GRKVSTPDEK KTNATAAEVV TAHHIGLQFN NHEAKAFLAK RWKEATSAEH VTLVLSQETE 600 IASNNKTHES SNGVISVRQK LRAKPEKGMK VKYVPKQRFP E

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MLFCLALSEF FSHFPFPVPS LSRIFSATFS PPQAASRIAL DPLRSVTVLL WNLMELVKQQ  60
DGNDSLDMLI RRAVGKDPFL SFPRPENSPV QLFQLLHTLE RPGWPLLTPL KIQMQKCEKC  120
TREFCSPVNF RRHNRMHRRL KKPEKDSGKE RDALGAFWNK LSVVEAKEIL SLKTMMLEEV  180
PGASVESGLV SLIERPGYTA LPQYYLRAGS ELLDIVQARP PRFPISSQEL FSILDDASEK  240
TFLSNEAAPI QKYIFDGETG KNVLDAKNVV ACTSFLLEQR LIKAWLADKD AEALRCQNLL  300
VEEEEAARRR QAELLERKKR KKLRQKEHRV KDQKKYAKED VSTTSDEQQY PAESSSPLSL  360
TSDSEAQRSD SIPIEDSSSL EDTQVLEMEN GINGEPQAPM VDGDDFGNSQ TLERRSGRRQ  420
MERSQQGMPN GFHANHAPKP GGMRKNGTSR DSRGNTTKVW TRKSDNPKLI SADAAVTQLD  480
QTKNSEVVIG SLSVTIGNSC ISGEHNQTKC GEEEVRSKTV EAKPGSEQTT AKIWRPVSSQ  540
GRKVSTPDEK KTNATAAEVV TAHHIGLQFN NHEAKAFLAK RWKEATSAEH VTLVLSQETE  600
IASNNKTHES SNGVISVRQK LRAKPEKGMK VKYVPKQRFP E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	321	RRRQAELLERKKRKK
2	315	322	ERKKRKKL
3	317	321	KKRKK
4	320	330	KKLRQKEHRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK29059.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413290.1	0.0	uncharacterized protein LOC18029908
Refseq	XP_024004636.1	0.0	uncharacterized protein LOC18029908
TrEMBL	A0A087GGQ7	0.0	A0A087GGQ7_ARAAL; Uncharacterized protein
STRING	A0A087GGQ7	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein