PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28288.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family SAP
Protein Properties Length: 500aa    MW: 55299.5 Da    PI: 6.3948
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28288.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP258.91.8e-7911701174
         SAP   1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltr 98 
                 mssssss+  + ++gs  ++g +a++g +e+ps sr+r  +n+vwpePfle+la+qva+das s+Grl+aa+alanvf+vcstw+ vsrsd+lwq l+r
  KFK28288.1   1 MSSSSSSDTGDGGAGS--SSGAGATGGVFEAPSPSRPRrGVNDVWPEPFLESLAVQVAVDASLSSGRLSAAPALANVFRVCSTWQTVSRSDHLWQLLSR 97 
                 7888887777666665..556667889*********9879*********************************************************** PP

         SAP  99 riWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrl 174
                 ++W rt+l++dtWr+e+iyrhrt+rnfrtr+y y tl+fdp+dvde   +d+lsCrcl+lsd ylaaGfadG+vr+
  KFK28288.1  98 HVWGRTRLMHDTWRDEFIYRHRTSRNFRTRTYGYYTLHFDPSDVDE---PDSLSCRCLTLSDLYLAAGFADGTVRI 170
                 ******************************************9998...689**********************97 PP
2SAP392.64.8e-120170421204453
         SAP 204 ivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmltelt 302
                 ivisds+l+fat+dGdihva++dg  ++++r+a++Gd+vndGalvdf+G+grWwvGl+aGvpGrafhiWd+ +ee++fvGGsltdPeavmGWh+ltelt
  KFK28288.1 170 IVISDSTLTFATMDGDIHVAQLDG--NGHTRTAYAGDIVNDGALVDFTGCGRWWVGLFAGVPGRAFHIWDCISEETTFVGGSLTDPEAVMGWHTLTELT 266
                 9***********************..67**********************************************************************8 PP

         SAP 303 elvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyal 399
                  ++Gr+r+t+ etavaCt+++++v+dlrnqgv+++e+ee  rGl+v+++da+++ayv+vd rG+ +vrr+e+ ++vc+frv+g aqr v+gCvn+ +al
  KFK28288.1 267 -SLGRLRITGIETAVACTRWKIMVIDLRNQGVIIGEDEEPrRGLMVTAFDANENAYVRVDGRGNVSVRRAETQQTVCEFRVSGaAQRSVMGCVNRLHAL 364
                 .58********************************9988779*****************************************9*************** PP

         SAP 400 vyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtihlldfg 453
                 +++ggv+rvWe+e+ e ylys+rervge++a+vaddrhvav+ss     +tihl+df+
  KFK28288.1 365 MCTGGVMRVWEVERGE-YLYSIRERVGELDAMVADDRHVAVASSsstaLSTIHLWDFA 421
                 **************77.************************9984333468******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.1E-570137No hitNo description
SuperFamilySSF813831.44E-671119IPR001810F-box domain
SuperFamilySSF509788.88E-9145221IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.7E-7149211IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509788.88E-9269428IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.7E-7278431IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSSSSSSDTG DGGAGSSSGA GATGGVFEAP SPSRPRRGVN DVWPEPFLES LAVQVAVDAS  60
LSSGRLSAAP ALANVFRVCS TWQTVSRSDH LWQLLSRHVW GRTRLMHDTW RDEFIYRHRT  120
SRNFRTRTYG YYTLHFDPSD VDEPDSLSCR CLTLSDLYLA AGFADGTVRI VISDSTLTFA  180
TMDGDIHVAQ LDGNGHTRTA YAGDIVNDGA LVDFTGCGRW WVGLFAGVPG RAFHIWDCIS  240
EETTFVGGSL TDPEAVMGWH TLTELTSLGR LRITGIETAV ACTRWKIMVI DLRNQGVIIG  300
EDEEPRRGLM VTAFDANENA YVRVDGRGNV SVRRAETQQT VCEFRVSGAA QRSVMGCVNR  360
LHALMCTGGV MRVWEVERGE YLYSIRERVG ELDAMVADDR HVAVASSSST ALSTIHLWDF  420
APNLIHRKFK RNRVRFEEIW PDFSSLNFPP ISRFIEALGR VGVHYLALWK LVNLINPTLL  480
TISRIEVGVD RILIGELFGV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198426.10.0Transducin/WD40 repeat-like superfamily protein
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A087GEI60.0A0A087GEI6_ARAAL; Uncharacterized protein
STRINGA0A087GEI60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]