PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27363.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 429aa    MW: 48780.5 Da    PI: 4.8133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27363.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10380427247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE e l ++vk++G   Wk I +  +     Rt+ ++k++w+++
       KFK27363.1 380 KFWTPEEVEGLREGVKEYGRS-WKDIKNANPtvfAERTEVDLKDKWRNL 427
                      67*****************55.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-12373429IPR009057Homeodomain-like
PROSITE profilePS5129415.91374429IPR017930Myb domain
SuperFamilySSF466891.27E-12376428IPR009057Homeodomain-like
SMARTSM007170.0018378429IPR001005SANT/Myb domain
CDDcd116604.36E-15380429No hitNo description
PfamPF002498.5E-8382427IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEVIDKWVAE FIIRRQQNPR VSPSNLLSAL RFGDSPDCLK LKISSVLRDI SNSLIRGTID  60
EGTLDLLEML EKLHLQEHSV LMESHKSAYC WTAVECTVRF MWPLSSSDGF FTDALERIWT  120
KRIEVLKESG SGLVSNELLK WEADLKIALE DSEMYQRIRE SNIRYTAISL LNQLLKEQWE  180
ILGSSALELV SQRTFLKRKA QNVDNRGDPN HVDESMRRGT SEEEDGNENN RENANDVEGV  240
RCLEGDGIDK VNAADEEETM SAQEEEPEPS LDKGDKTVAR ELKEFLLEIQ GHIDSSTRKE  300
EQEPNNGIDY SVDVTPQPAR GNRTGTSRQV RNETPDSANE KGSGSQGTWS GRVGPRLPTP  360
VPLNVSPLKK ENSNARRPKK FWTPEEVEGL REGVKEYGRS WKDIKNANPT VFAERTEVDL  420
KDKWRNLVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401096.20.0uncharacterized protein LOC18018067 isoform X3
TrEMBLA0A087GBW10.0A0A087GBW1_ARAAL; Uncharacterized protein
STRINGA0A087GBW20.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein