PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27340.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARR-B
Protein Properties Length: 640aa    MW: 71667 Da    PI: 5.4096
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27340.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.8e-29207260155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W++eLH++Fv av+qL G ekA+Pk+il++m+++gLt+e+v+SHLQkYRl
  KFK27340.1 207 KPRVVWSQELHQKFVTAVQQL-GLEKAVPKKILDFMNIEGLTRENVASHLQKYRL 260
                 79*******************.********************************8 PP
2Response_reg68.82.4e-23231301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ l+++l + +y +v+ + +++ ale+l+e+   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + + +  Ga 
    KFK27340.1  23 VLAVDDNPTCLRKLEELLIRCKY-HVTKTMESKRALEMLRENSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHGAC 116
                   799********************.***************999999******************985344..57************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  +el++
    KFK27340.1 117 DYLVKPVGLKELRN 130
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.4E-1653639IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.3E-3420169No hitNo description
SuperFamilySSF521721.71E-3020139IPR011006CheY-like superfamily
SMARTSM004481.7E-2621132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.85222136IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-2123131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.19E-2424135No hitNo description
PROSITE profilePS5129411.137204263IPR017930Myb domain
SuperFamilySSF466899.5E-20204264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-29205265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25207260IPR006447Myb domain, plants
PfamPF002492.3E-8209259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MENMEMLRTE EGRTEQFPVG MRVLAVDDNP TCLRKLEELL IRCKYHVTKT MESKRALEML  60
RENSNMFDLV ISDVEMPDTD GFKLLEIGLE MDLPVIMLSA HSDYDSVMKG IIHGACDYLV  120
KPVGLKELRN IWQHVVKKKI KSYKKNVGPS RQLISPSESH LAASSGLSKK RKEKANDSGD  180
EDDSDREEED GEGSEEQDGE ESSTRKKPRV VWSQELHQKF VTAVQQLGLE KAVPKKILDF  240
MNIEGLTREN VASHLQKYRL YLKKIDESQQ QNMAQDTFGT KDSSYYQMAQ LDGFRDYTTT  300
RHLQTSSLLS RSHFSKPHPS TCSSINLQGI NSSSFIRQGY HHQNTSNSAN PYGTYHSSLL  360
SSRAQNVNLS PLQFPRSKCS TYMGDYKTTG DRAIGGSFLD SHMTFGSSST SLPSASSNTP  420
MFQANYRQTS VGNQSCLEGA MSNSGSLNIG VNGLSSFPSS SWQGNMRTTR FPSNSLPLNH  480
VFSQDQMAYA GNGLEDGTAF VSAANPGVDM QCEPQLVGDF MQNMNTLDGQ KWEEENTFGN  540
VDYPLPEGNM VFRDNTRSKV LDESSLVIPI EDNATLNSHE YLGKSTMLDP EMKSGKSQNA  600
FVDNQHDVFD DIMNEMMKQD ENNRMGSMAT RFGLDSFPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-24203265163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483380.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLA0A087GBT80.0A0A087GBT8_ARAAL; Two-component response regulator
STRINGA0A087GBT80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18