PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27314.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 339aa    MW: 38403.5 Da    PI: 4.2813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27314.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19211051099
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    s+rlv+p ++  ++ ++++ ++t +l+ ++gr W+vk ++  +++++ +++GW++Fvk+ng+ egDfv+F++dg++ f  +v+vfr 
  KFK27314.1  21 QEHSQRLVIPSSYK-QY-YPTPLPQTAVLKKPEGRFWNVKWTI-TQDDTISFEDGWSKFVKDNGIIEGDFVLFTYDGNRVF--WVRVFRG 105
                 456789******96.55.4567999****************54.4445699**************************9999..****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2210105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.46612106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-2112105IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-1514106IPR003340B3 DNA binding domain
PfamPF023626.6E-1720105IPR003340B3 DNA binding domain
CDDcd100173.86E-1723104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDFDEYGFSP FPDFFRYYNS QEHSQRLVIP SSYKQYYPTP LPQTAVLKKP EGRFWNVKWT  60
ITQDDTISFE DGWSKFVKDN GIIEGDFVLF TYDGNRVFWV RVFRGDMVVK PESPVKIQEI  120
SDDEDDDTTG GDDDHGVELD SNGNMIISIS LGSSDEDYVD EDETTGGGGG DHGVEEDSNE  180
NMIISLSLGS SDEDYDDDYV DDDEDTMLCE ANSACNGSVM KGGSSQKNCV ALVAADAEKY  240
LDEPNNPFFI AKSPSARRVL VINMQVRKDY DLKFGSTINI IDRFGEVKRK IGVWKDRLVI  300
NKWDEIYKRN KGKPGDSVVC EILRERGVVH SLKVHFVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881209.11e-114B3 domain-containing protein At5g57720 isoform X1
SwissprotQ9FHH11e-106Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A087GBR20.0A0A087GBR2_ARAAL; Uncharacterized protein
STRINGA0A087GBR20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-100B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]