PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK27286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | AP2 | ||||||||
Protein Properties | Length: 550aa MW: 59648.6 Da PI: 7.9166 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.6 | 1.2e-11 | 197 | 253 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g KFK27286.1 197 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 253 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 298 | 347 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KFK27286.1 298 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 347 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-9 | 197 | 253 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-19 | 197 | 263 | No hit | No description |
SuperFamily | SSF54171 | 4.25E-15 | 197 | 263 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-12 | 198 | 262 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-23 | 198 | 267 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 198 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 199 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 296 | 357 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.35E-24 | 296 | 357 | No hit | No description |
PROSITE profile | PS51032 | 19.203 | 297 | 355 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 297 | 355 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 297 | 361 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 298 | 347 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 337 | 357 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MKNNNNNKSS SSSSYDSSLS PSSSSSSHQN WLSFSLSNNT SSNPNLTSST SDHHHPHLSL 60 FQAFSTSPVQ RQDESPGVAT GDAMAVLYNY PGGPKLENFL GGGATTTTTT RPMQQVQSLH 120 GGVLSSDLQP PHPPPPSAAE IYDYELKSIA ASFLGNYSGG HSSEVSSGHK QQDNTSVVSE 180 VSPTPKKNVE SFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QGGYDKEEKA 240 ARAYDLAALK YWGPTTTTNF PISNYESELE EMKHMTRQEF VASLRRKSSG FSRGASMYRG 300 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDISRYD 360 VKSIATCNLP VGGLMPKQSP ATAAADKAID PSPSDPLPLT TSSLTFNVAT PVHDQGRTFF 420 HTGIPIKPDP ADHYWSNVFG FQANPKAEIR PMATFGSDLH NPSPGFAIMP VMQDGENNFG 480 GGFVGSEGYT NHSAASSAVT AIPLSSTTTI GNGNEGYVGN INWINNNISN SYQNPKANLS 540 VMQTPVFGLE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK27286.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY585685 | 0.0 | AY585685.1 Arabidopsis thaliana clone at5g57390 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483252.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 0.0 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A087GBN4 | 0.0 | A0A087GBN4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GBN4 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 0.0 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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