PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK26908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | Nin-like | ||||||||
Protein Properties | Length: 236aa MW: 27446.3 Da PI: 8.9437 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.3 | 1.1e-26 | 123 | 173 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l+++++yF+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl KFK26908.1 123 QDKLELSEIRRYFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 173 6799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.041 | 108 | 195 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.6E-22 | 126 | 173 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDPNSLPQLN SPKIENPYDP DSLYAMLEKL PPLESLLDTD DLKPNEGLDF QFHQFDGFED 60 FFENMDVNNN ISSDILMLTQ EPYISSGSAS PLAIQSNEHF GSDVRREKRT PKKKRNVKKT 120 KRQDKLELSE IRRYFDRPIM KAAKELNVGL TVLKKRCREL GIYRWPHRKL KSLNSLIRNL 180 KGVGMDEEVK NLEEHRILIE QEPDAELTDG TKKLRQACFK ANYKRRKSLG AIGDYY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK26908.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009119842.1 | 1e-124 | PREDICTED: protein RKD4 | ||||
Refseq | XP_013726811.1 | 1e-124 | protein RKD4 | ||||
Swissprot | Q9LVU8 | 1e-110 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A087GAK6 | 1e-173 | A0A087GAK6_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GAK6 | 1e-174 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-109 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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