PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK26883.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

WRKY

Protein Properties

Length: 340aa MW: 37994.8 Da PI: 4.955

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK26883.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.4e-31	166	224	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+ KFK26883.1 166 SDMWAWRKYGQKPIKGSPYPRNYYRCSSTkGCLARKQVERSNLDPNIFIVTYTGEHTHP 224 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-31	152	226	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-27	158	226	IPR003657	WRKY domain
PROSITE profile	PS50811	33.051	160	226	IPR003657	WRKY domain
SMART	SM00774	5.2E-39	165	225	IPR003657	WRKY domain
Pfam	PF03106	3.3E-26	167	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSEDWDLFAV VRSCSSSVST ATNNGGNCKQ QDPPPPSPPP LFTHIHGDRD KERESSSSCN 60 ELQDSCKPFL PVTTTWSSPL VSSAHNVLMK QELIESQDQK PPLGVRVFPP SSTTISPSSS 120 SSVFVFRGQR DQLLQQQSHQ APLRSRKRKN QQKRTICHVT QENLSSDMWA WRKYGQKPIK 180 GSPYPRNYYR CSSTKGCLAR KQVERSNLDP NIFIVTYTGE HTHPRPTHRN SLAGSTRNKS 240 QPVNPIPKPE TVLVGSNIVK EEIHLSPTTP LKENDDVQGT NGDEEVNMED EEDEMEEEEE 300 GEEDDDDVDD LLIPNFTVRD RDDLFFPSSW SAGSAGDGGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	167	227	18	80	Disease resistance protein RRS1
5w3x_D	2e-20	167	227	18	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK26883.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912398	0.0	EU912398.1 Brassica napus WRKY27-1 transcription factor (WRKY27-1) mRNA, partial cds.
GenBank	KC246573	0.0	KC246573.1 Brassica napus WRKY transcription factor 27.1 (WRKY27.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442827.1	1e-147	PREDICTED: probable WRKY transcription factor 27
Swissprot	Q9FLX8	1e-128	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A087GAI1	0.0	A0A087GAI1_ARAAL; Uncharacterized protein
STRING	A0A087GAI1	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9998	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-110	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]