PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26805.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 434aa    MW: 47225.2 Da    PI: 7.1568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26805.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06111132426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+f+   G C yGd+C++ H+
  KFK26805.1 111 KVCNFWVD-GNCTYGDKCRYLHC 132
                 68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9342753IPR000571Zinc finger, CCCH-type
SMARTSM003560.0052752IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6107131IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5109133IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4111132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5111128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.0E-15129246IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.49E-45138428IPR017986WD40-repeat-containing domain
SMARTSM003209.1E-5138177IPR001680WD40 repeat
PfamPF004000.005141177IPR001680WD40 repeat
PROSITE profilePS5008213.349145186IPR001680WD40 repeat
PROSITE profilePS5029419.723145347IPR017986WD40-repeat-containing domain
PRINTSPR003202.6E-6164178IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
SMARTSM003203.7217254IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.108.4E-30247428IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.017261298IPR001680WD40 repeat
PfamPF004000.1266298IPR001680WD40 repeat
PROSITE profilePS5008211.511268307IPR001680WD40 repeat
PRINTSPR003202.6E-6285299IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4301338IPR001680WD40 repeat
PfamPF004000.0046303337IPR001680WD40 repeat
PRINTSPR003202.6E-6325339IPR020472G-protein beta WD-40 repeat
SMARTSM0032013342385IPR001680WD40 repeat
SMARTSM003203.4388425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDFDSNGGNK RVFNRLGGSS RPSPPTDSRQ RVCYHWRAGR CTRSPCPYLH RELPGPGQGQ  60
GQGQGQGYTN KRVAEESSFA GPSHRRGPGF SGNSNSWGRF GGNRTVTKTE KVCNFWVDGN  120
CTYGDKCRYL HCWSKGDSFS LLTQLDGHEK LVSGIALPSG SDKLYTGSKD ETMRVWDCAS  180
GQCTSVLNLG GEIGCVISEG PWLLVGMPNL VKAWNIETNE DQSLTGPVGQ VYSLVVGTDL  240
LFAGTQDGSI LAWRYNVATS CFEPAASLKG HTLAVVTLYV GANRLYSGSM DKSIKVWSLD  300
NLQCIQTLTD HTSVVMSLIC WDQFLLSCSL DNTVKIWAAI EGGNLEVTYT HKEEHGVLAL  360
CGIHDAEAKP VLLCSCNDNS LCLYDLPSFT ERGKIFAKQE IRSIQIGPGG IFFTGDGTGQ  420
VKVWKWTEPT AASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-201424248323Tako8
6g6n_A6e-201424248323Tako8
6g6n_B6e-201424248323Tako8
6g6n_C6e-201424248323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401881.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A087GAA30.0A0A087GAA3_ARAAL; Uncharacterized protein
STRINGA0A087GAA30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein