PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK26576.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARR-B | ||||||||
Protein Properties | Length: 494aa MW: 56155.9 Da PI: 6.2453 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 72.2 | 7.5e-23 | 212 | 266 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W eLH++F+ aveqL G +A+Pk+ilelm+ +++++e+v+SHLQk+R++ KFK26576.1 212 KRRVVWEDELHKKFLAAVEQL-GLANAVPKKILELMNDPSISRENVASHLQKFRIH 266 689******************.9*******************************86 PP | |||||||
2 | Response_reg | 45.8 | 3.2e-16 | 38 | 145 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+ d++p+ r++l++ l++ +y +v + + + a++ll++++ +D+ ++ + ++ d ++l++ei e ++p+i+++ ++ e +++ ++ Ga KFK26576.1 38 VLVFDEDPVYRQVLEKHLQEFRY-QVWICNEEDRAMHLLRNHRdrFDIAIIEAQDSKGDRFRLISEIGLEM-DIPVIIMSKDDSVESVVDWMRNGAC 132 8999*******************.***************999999**********************6654.8************************ PP EEEESS--HHHHH CS Response_reg 96 dflsKpfdpeelv 108 d+l Kp+ pe+l+ KFK26576.1 133 DYLIKPIRPEDLR 145 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.7E-22 | 34 | 152 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.3E-23 | 35 | 159 | No hit | No description |
SMART | SM00448 | 2.0E-10 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 29.219 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.9E-11 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.84E-12 | 39 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 209 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-17 | 209 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-22 | 212 | 266 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:3.40.50.2300 | 5.3E-23 | 269 | 284 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MAVKCDHRGI QTSDGGPNTD LPNSCDIVSG QFPEGLRVLV FDEDPVYRQV LEKHLQEFRY 60 QVWICNEEDR AMHLLRNHRD RFDIAIIEAQ DSKGDRFRLI SEIGLEMDIP VIIMSKDDSV 120 ESVVDWMRNG ACDYLIKPIR PEDLRMIFKH VAMKMQGRRS VAAGEAEEKV GGTVAKSSSV 180 GDSTIRNPNK RKRGIDEDHD HDRCDRTSTS KKRRVVWEDE LHKKFLAAVE QLGLANAVPK 240 KILELMNDPS ISRENVASHL QKFRIHLKKQ EEQKERDQKN ISLTTQREGR TYGGEEATDF 300 HKGGDVQFPT FHIDNIPGQP WMQQQHITNT NLTTQLVSPL GHHHLGDGVS VAVSSRNLVM 360 THHHHHTSEL ACIENTQESL GYNNFEMHNE EEAAVGNLTC LYMQNSQDLF QFHEPVMATT 420 TMIPNHHHSS ASLQMSQPMS NGHVTESAML HSPSFPSSYT HNSFLDQQEI LTMVDECGVF 480 NYDSAYSVNN NKVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-19 | 208 | 269 | 1 | 62 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK26576.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597017.1 | 1e-146 | PREDICTED: two-component response regulator ARR14 | ||||
Refseq | XP_013706135.1 | 1e-146 | two-component response regulator ARR14-like | ||||
Swissprot | Q9FJ16 | 1e-109 | APRR4_ARATH; Putative two-component response regulator-like APRR4 | ||||
TrEMBL | A0A087G9M4 | 0.0 | A0A087G9M4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G9M3 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49240.1 | 1e-111 | pseudo-response regulator 4 |