PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK26575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARR-B | ||||||||
Protein Properties | Length: 496aa MW: 56405.1 Da PI: 6.3055 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 72.2 | 7.5e-23 | 214 | 268 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W eLH++F+ aveqL G +A+Pk+ilelm+ +++++e+v+SHLQk+R++ KFK26575.1 214 KRRVVWEDELHKKFLAAVEQL-GLANAVPKKILELMNDPSISRENVASHLQKFRIH 268 689******************.9*******************************86 PP | |||||||
2 | Response_reg | 36.9 | 2e-13 | 38 | 147 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE..EEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii..vvtahgeeedalealkaG 93 vl+ d++p+ r++l++ l++ +y +v + + + a++ll++++ +D+ ++ + ++ d ++l++ei e ++p+i +++ ++ e +++ ++ G KFK26575.1 38 VLVFDEDPVYRQVLEKHLQEFRY-QVWICNEEDRAMHLLRNHRdrFDIAIIEAQDSKGDRFRLISEIGLEM-DIPVIskFMSKDDSVESVVDWMRNG 132 8999*******************.***************999999**********************5544.68887668999999*********** PP ESEEEESS--HHHHH CS Response_reg 94 akdflsKpfdpeelv 108 a d+l Kp+ pe+l+ KFK26575.1 133 ACDYLIKPIRPEDLR 147 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.83E-19 | 34 | 154 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.8E-20 | 35 | 161 | No hit | No description |
SMART | SM00448 | 2.4E-6 | 36 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 26.01 | 37 | 154 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-8 | 38 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.05E-11 | 39 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 211 | 270 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-17 | 211 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-22 | 214 | 268 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:3.40.50.2300 | 6.8E-20 | 271 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MAVKCDHRGI QTSDGGPNTD LPNSCDIVSG QFPEGLRVLV FDEDPVYRQV LEKHLQEFRY 60 QVWICNEEDR AMHLLRNHRD RFDIAIIEAQ DSKGDRFRLI SEIGLEMDIP VISKFMSKDD 120 SVESVVDWMR NGACDYLIKP IRPEDLRMIF KHVAMKMQGR RSVAAGEAEE KVGGTVAKSS 180 SVGDSTIRNP NKRKRGIDED HDHDRCDRTS TSKKRRVVWE DELHKKFLAA VEQLGLANAV 240 PKKILELMND PSISRENVAS HLQKFRIHLK KQEEQKERDQ KNISLTTQRE GRTYGGEEAT 300 DFHKGGDVQF PTFHIDNIPG QPWMQQQHIT NTNLTTQLVS PLGHHHLGDG VSVAVSSRNL 360 VMTHHHHHTS ELACIENTQE SLGYNNFEMH NEEEAAVGNL TCLYMQNSQD LFQFHEPVMA 420 TTTMIPNHHH SSASLQMSQP MSNGHVTESA MLHSPSFPSS YTHNSFLDQQ EILTMVDECG 480 VFNYDSAYSV NNNKVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-19 | 210 | 271 | 1 | 62 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK26575.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597017.1 | 1e-143 | PREDICTED: two-component response regulator ARR14 | ||||
Refseq | XP_013706135.1 | 1e-143 | two-component response regulator ARR14-like | ||||
Swissprot | Q9FJ16 | 1e-106 | APRR4_ARATH; Putative two-component response regulator-like APRR4 | ||||
TrEMBL | A0A087G9M3 | 0.0 | A0A087G9M3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G9M3 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13222 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49240.1 | 1e-108 | pseudo-response regulator 4 |