PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK26574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARR-B | ||||||||
Protein Properties | Length: 261aa MW: 29774.8 Da PI: 6.4264 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62.8 | 6.6e-20 | 212 | 261 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r++W eLH++F+ aveqL G +A+Pk+ilelm+ +++++e+v+SHLQ KFK26574.1 212 KRRVVWEDELHKKFLAAVEQL-GLANAVPKKILELMNDPSISRENVASHLQ 261 689******************.9***************************9 PP | |||||||
2 | Response_reg | 47.6 | 9e-17 | 38 | 145 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+ d++p+ r++l++ l++ +y +v + + + a++ll++++ +D+ ++ + ++ d ++l++ei e ++p+i+++ ++ e +++ ++ Ga KFK26574.1 38 VLVFDEDPVYRQVLEKHLQEFRY-QVWICNEEDRAMHLLRNHRdrFDIAIIEAQDSKGDRFRLISEIGLEM-DIPVIIMSKDDSVESVVDWMRNGAC 132 8999*******************.***************999999**********************6654.8************************ PP EEEESS--HHHHH CS Response_reg 96 dflsKpfdpeelv 108 d+l Kp+ pe+l+ KFK26574.1 133 DYLIKPIRPEDLR 145 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 6.97E-23 | 34 | 152 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.2E-24 | 35 | 169 | No hit | No description |
SMART | SM00448 | 2.0E-10 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 29.219 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.3E-12 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.46E-12 | 39 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-20 | 209 | 261 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-13 | 209 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-19 | 212 | 261 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAVKCDHRGI QTSDGGPNTD LPNSCDIVSG QFPEGLRVLV FDEDPVYRQV LEKHLQEFRY 60 QVWICNEEDR AMHLLRNHRD RFDIAIIEAQ DSKGDRFRLI SEIGLEMDIP VIIMSKDDSV 120 ESVVDWMRNG ACDYLIKPIR PEDLRMIFKH VAMKMQGRRS VAAGEAEEKV GGTVAKSSSV 180 GDSTIRNPNK RKRGIDEDHD HDRCDRTSTS KKRRVVWEDE LHKKFLAAVE QLGLANAVPK 240 KILELMNDPS ISRENVASHL Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-15 | 208 | 261 | 1 | 54 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK26574.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863976.2 | 1e-113 | putative two-component response regulator-like APRR4 isoform X2 | ||||
Swissprot | Q9FJ16 | 1e-112 | APRR4_ARATH; Putative two-component response regulator-like APRR4 | ||||
TrEMBL | A0A087G9M2 | 0.0 | A0A087G9M2_ARAAL; Uncharacterized protein | ||||
TrEMBL | A0A087G9M4 | 0.0 | A0A087G9M4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G9M3 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49240.1 | 1e-114 | pseudo-response regulator 4 |