PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25038.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 337aa    MW: 37631.7 Da    PI: 9.5738
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25038.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.21.4e-34121220298
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiW 96 
                 +fqrl+se+Dei+lLqG++df++++g +p++ +d f+e+vkk i+f+++ksqlv+KirrLKkKf +  k+     ks++e++fsk+ dqk+f+ls+k+W
  KFK25038.1 121 MFQRLFSENDEIALLQGILDFTSTRG-DPYEKMDVFCEYVKKLINFDANKSQLVTKIRRLKKKFGNTIKNslkkGKSEDEIVFSKDLDQKAFHLSRKVW 218
                 69************************.9************************************98887766669999********************* PP

      DUF573  97 gs 98 
                 gs
  KFK25038.1 219 GS 220
                 95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.7E-28122219IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAPKHTDTIQ NPPMPSSSSE EESASSGEDS DSSKKHNSAS DSDPIKTKIV VTKPESSGSM  60
KTTTKSSVVV AEPESTTAKR PLKETEEDVE VKKKKMKTEL VMKNQEPEEK VSGDETKKQL  120
MFQRLFSEND EIALLQGILD FTSTRGDPYE KMDVFCEYVK KLINFDANKS QLVTKIRRLK  180
KKFGNTIKNS LKKGKSEDEI VFSKDLDQKA FHLSRKVWGS NGVLASKSRK KLGENSKEII  240
KKEEKPKQNV VSVCRSSSEG GEIASFFKAE NTTAFGLDEP TVAARWEMVS DVAKKREMEE  300
KLKKLKATQE ELCLQRTGIV ADTVKLIFND NASSSSK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736645.19e-99GLABROUS1 enhancer-binding protein-like
RefseqXP_024005322.11e-98LOW QUALITY PROTEIN: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB422e-93STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A087G5860.0A0A087G586_ARAAL; Uncharacterized protein
STRINGA0A087G5860.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.15e-75DNA-binding storekeeper protein-related transcriptional regulator