PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24804.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 278aa    MW: 30091.9 Da    PI: 8.0105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24804.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017111133123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+ksF +   L  H  +H
  KFK24804.1 111 YQCKTCDKSFHSFQALGGHRASH 133
                 9*********9988888887776 PP
2zf-C2H211.60.00088185207123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+  Fs+   L  H+r+H
  KFK24804.1 185 HECSICKAEFSSGQALGGHMRRH 207
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-10110133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.48E-9110133No hitNo description
SMARTSM003550.041111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.48E-9180207No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4182209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12184209IPR007087Zinc finger, C2H2
SMARTSM003550.031185207IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTSVHEENGD HSRLVLLIKG KRTKRQRSAS PLMNAAAISS VCSGERSIGV REEEAGEVEF  60
FGATDEDEDI ANCLMLLSQG HKPKCSNDQK FGFFGHKKPV ASIGLGLDGV YQCKTCDKSF  120
HSFQALGGHR ASHASHKKPK LGASVFRCDE KKTAVETVEA GSVVGSFLSL QVTSNDGNKK  180
PEKTHECSIC KAEFSSGQAL GGHMRRHRGL TVTANATSTI KTSISSSSHH QESIRPKNFL  240
ELDLNLPAPE DEPKFAFASK DQILLFAAAS NSLIDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871040.11e-157zinc finger protein ZAT5
TrEMBLA0A087G4K20.0A0A087G4K2_ARAAL; Uncharacterized protein
STRINGA0A087G4K20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-143C2H2 family protein