PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24151.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 364aa    MW: 40582.5 Da    PI: 8.4231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24151.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05115138123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++C+ Cg+ F+   +L++Hi+  H
  KFK24151.1 115 FSCTSCGEIFPKINLLEQHISIkH 138
                 89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PROSITE profilePS501579.411115143IPR007087Zinc finger, C2H2
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
SuperFamilySSF563993.6E-11140363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAAQKLSSLL RQYFLSLFFL LVGCFFFPRG GSSTQKRRKK KLRTITSSSS WTYLKRVFFK  60
SRNQTHPNHA PSLTSARSSQ NSLVTLVQPD PINPPDPENV FSDDSLFFHL RNEIFSCTSC  120
GEIFPKINLL EQHISIKHAV SELIDGESNT NIVKIIFKSG WPEQSNKIPL IQRILKIHNS  180
QKILTRFEEY RELVKAKAAR SINGGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQIGNS  240
RLCGHQYCSI CGIIGGGFSP KLDGIATLAT GWRGHVSVPE EVEEEFGFMN VKRAMLVCRV  300
VAGRVGCDLI GDDGDVDKSD GGYDSLVGQG SGNRSGALLR IDDEELLLFN PRAVLPCFVI  360
VYTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RRKKKL
23642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK24151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410025.10.0uncharacterized protein LOC18027693
TrEMBLA0A087G2P90.0A0A087G2P9_ARAAL; Uncharacterized protein
STRINGA0A087G2P90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-162C2H2 family protein