PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK22955.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 455aa    MW: 52027.3 Da    PI: 9.1748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK22955.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07256298140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
       KFK22955.1 256 KQPWSKEEIDMLRKGTIKYPMGtsqRWEVISEYIGTGRSVEEI 298
                      79************************************99876 PP
2Myb_DNA-binding28.53.5e-09399442445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  +  +v+avk ++++   +W+++a+ ++ g+t  qck ++ 
       KFK22955.1 399 WSAVQERAFVQAVKTFPKEtsqRWERVAAAVP-GKTMSQCKKKFA 442
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-7248299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-5250299IPR009057Homeodomain-like
PROSITE profilePS500906.284251306IPR017877Myb-like domain
SMARTSM007174.5E-6255308IPR001005SANT/Myb domain
PfamPF002491.1E-5256298IPR001005SANT/Myb domain
CDDcd001673.43E-4258298No hitNo description
PROSITE profilePS512939.442394449IPR017884SANT domain
SuperFamilySSF466898.22E-9395444IPR009057Homeodomain-like
SMARTSM007172.3E-8395447IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-5399444IPR009057Homeodomain-like
PfamPF002492.1E-7399443IPR001005SANT/Myb domain
CDDcd001673.28E-6399445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
FKRNARWSVN QRLPDLGDEN TKLRDVDKFY NFWYAFKSWR EFPDEEEHDL EEADSREERR  60
WMEKENAKKT AKARKEEHAR IRTLVDNAYR KDPRIVKRKE DERAEKQQKK DAKLLAKKKQ  120
EEEAAIAAEE EKRRKEEEEK RAAEAAKQQK KIKEKEKKLL RKERSRLRTL SAPLVAQRLL  180
DISTEDIEDL CMSLNTQQLQ SLCDKMENKE GLELAKVIKN GCNQEEADTE EKESEKTNGG  240
VEPTTRVSLL DSNEKKQPWS KEEIDMLRKG TIKYPMGTSQ RWEVISEYIG TGRSVEEILK  300
ATKTVLLQKP DSAKAFDSFL EKRKPSASIA SPLSTREELG ESLPSTTKPE PSKETVVGKN  360
PSSRSSDNNG EANGSLDNNG DANGSSDNNG EANGSSDGWS AVQERAFVQA VKTFPKETSQ  420
RWERVAAAVP GKTMSQCKKK FAELKEIIRN KKTAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116134KKKQEEEAAIAAEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK22955.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187752.20.0DnaJ and Myb-like DNA-binding domain-containing protein
TrEMBLA0A087FZA30.0A0A087FZA3_ARAAL; Uncharacterized protein (Fragment)
STRINGA0A087FZA30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain