PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK22204.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

TCP

Protein Properties

Length: 387aa MW: 40980.1 Da PI: 7.383

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK22204.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.6	2.2e-38	55	171	2	115
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...kaaksaa. 95 +++k++ +++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLl+qa+pai+++tgt++++a+++ ++s +ss+s+ s++ + +++ KFK22204.1 55 TTAKRPAKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLNQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSKSapiS---FHNs 150 6789*****************************************************************99999999999999777774441...3332 PP TCP 96 .kskksqksaasalnlakesr 115 + +++++++ ++ ++ ++ KFK22204.1 151 aLKLYDETHTNNSSSSDDPTS 171 122222222332333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.335	61	115	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.9E-36	61	164	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MESHKNNNNQ SNTDHHHQQT TGSAHLVPFM GPNSGSTSLT TTTNAAADTV SVPKTTAKRP 60 AKDRHIKVDG RGRRIRMPAI CAARVFQLTR ELQHKSDGET IEWLLNQAEP AIIAATGTGT 120 IPANFSTLNV SLRSSGSTLS KSAPISFHNS ALKLYDETHT NNSSSSDDPT SRKFIGRAAQ 180 NAAVFGFQQQ LYPPHHIMSH DPNSLPKSFR EEDLFKDPNS FHHDNTGGSS SPKPGSEGSD 240 QDPGSTRSRT QNMIPPMWAV AAPTPTSANG GSAFWMLPVG GGGGPPAQDP SQHMWAFNPG 300 HYPGRIGSVQ LGSMLVQQAA VGGQQLGLNV VDSNNLGMFS GGEGGYGGGG SGRVCLGMSL 360 EQKDQLHEHH QVTDATGDQN PTIAGSP

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MESHKNNNNQ SNTDHHHQQT TGSAHLVPFM GPNSGSTSLT TTTNAAADTV SVPKTTAKRP  60
AKDRHIKVDG RGRRIRMPAI CAARVFQLTR ELQHKSDGET IEWLLNQAEP AIIAATGTGT  120
IPANFSTLNV SLRSSGSTLS KSAPISFHNS ALKLYDETHT NNSSSSDDPT SRKFIGRAAQ  180
NAAVFGFQQQ LYPPHHIMSH DPNSLPKSFR EEDLFKDPNS FHHDNTGGSS SPKPGSEGSD  240
QDPGSTRSRT QNMIPPMWAV AAPTPTSANG GSAFWMLPVG GGGGPPAQDP SQHMWAFNPG  300
HYPGRIGSVQ LGSMLVQQAA VGGQQLGLNV VDSNNLGMFS GGEGGYGGGG SGRVCLGMSL  360
EQKDQLHEHH QVTDATGDQN PTIAGSP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK22204.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397460.1	0.0	transcription factor TCP23
Swissprot	Q9LQF0	1e-151	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A087FX52	0.0	A0A087FX52_ARAAL; Uncharacterized protein
STRING	A0A087FX52	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-125	TCP family protein